Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium341g00001 ATGAAACCGGCAACTTCTTCAGAAAGCAACACATTTCAAGAACCTCTCTTTTGCAATGCTTTGTTCCTCTTTCCCACCACTTTTCTCTTCTTCCTCCTCCTCCTCCCCTCTGTTACTTTCATTCCCTCTCTTCCCCTCCGACAACCTCACCCTCTACGTGACGGACCTTCTTTCTCTCACAAAGCCATCACTCTCACCACCCACCAACCCTCCTGCTCCTCCTCCTCCATCGGCAGAGCCTTCTTCATCTACCCCCTCCGTTTTCTTGACCCCCAAACCAACTCCACCGCCTCCTTCATCTCCCGCTTCTCCTTCTCCATCCTCTCCTCTCCCTCCTGCCCCTCAGGCGAAGGCCTCGCCTTCCTCATTGCCTCTTCCACCCACTTCCCCGCCCTCTCCATGGGCCTCCCCCAACCCTCCCCCAACTCAACCTCCTTCTTCGCCGTCGAGTTCGACACTACCTTCGACCCCTCCCTCGGCGACATCAACGACAACCACGTGGCCTCGACGTCAACAAGCGCCTCTCCTTCGCGTTCCGTCGACGCCTTCTCTCCACCCTTCGCGGGCATAATGAACCTCAAGAAGTATATGCAAACTCATCACATAGCATGGGTGGAGTACCGTCCATGCAATCAAGATGGTAAGTTGTATGCTCGCTTATTATTTTCCTCCACCAGACCGCTTCCACTCCCATTCTTGTTTCTCAAATAGACCTTCTCCGAGAGACTTCAAGACTTCATGCACGTTGGTTTCACGGCCTCCAATGGGAAGGGGTCCCAAGTGATTACCTTGGTTCAATCATTGGCAGTTCACGACTTTTCGCGCCATGACCTCCCTAGGGACGTCTCGCTCACATGGACGTGATCGATGAAGGTGGGGGACTGTTTCTTGTGTTACGAAGGGGATTAAAAGATTAAGGAGATGGCTCTTGGGGTTTGGGAGGGTTTGACGGCGTTTGTGGTGTCGGTTTTGGCGGCGATGATTGTGGTGTGGTGTTTTTCCTTGACAGGAAGAAACGGAGTTGTTGGAAGAACTATGGAGCAAGGCAAGTTGTGGGTCTCGGACGAGTAAAGTCCGACTAGGTTGTCACTATCGGAGATTAAGTCTGCGACAATGGGGTTTAATCGTGACAGGCTTGTTGGGGAGGGTGCCTCTGCCAAGGTTTATAAAGGGTATCTTCCCTTCGGAGGGGATGTGGCAGTGAAGAGATTTCAGAGGCAAAAGGATTTGAATTGTTTGCACAACCCTTTTGCCACCGAGTTTGCCACCATGGTGGGTTGCCTGCGGCACAAGAATTTGGTTCAGCTTAAGGGGTGGTGCTGTGAGGGAAAAGAGTTGGTCCTGGTTTACGAGTTTCTTCCCAATGGGAGCCTGAATAAGGTTCTGCACAGGAACTTCAATTCTTCCATTGTTCTTTCGTGGAGGCAAAGGGAGAATATCGTTCTTGGGGTTGCTGCTGCTCTGACCTATCTTCATGAAGAGTGTGAGAGGCAGATCATTCACAGGGATGTGAAGAGCTGCAACATAATGCTGGATGCAGATTTCAATGCAAAGCTTGGTGATTTTGGGCTTGCGGAAGTGTATGAGCACAGTTGTAGCAGGAGGGAGGCTACAATACCAGCAGGGACAATGGGGTATCTTGCTCCTGAGTATGTTTATTCTGGTGTTCCTACTGTGAAGAGTGATGTGTACAGCTTTGGGGTGGTGGTGTTGGAAGTGGGAAGTGGGAGGAAGCCTGTGGAAGATGATGGCAGTGTGGTGGTAGACTATGTGTGGAGCTTGTGGGAAAAGGGGAAACTGATTGAGGGTGCTGATCCAAGATTGATGGGGAAATTTGATGCAGTAGATATGGAAAGGATGCTATTGGTGGGGCTTCTATGTGTGCATCCTGATCATGAGAAGAGGCCAACAGTAAGAGAAGCAGCAAGAATCCTTAACAAGGAAGCACCGCTTCCTGTTTTGCCTCCCGTTAAACCAAGGCTCAGAATTAGGCCTATTTCTCCTCAAACACACCATGTTCTTGGAGATTGCCTCGGCACAGATGAGCCTCCTTATTTCACCCCCAGAAGCCACTTTTACTAG 2082 0.5072 MKPATSSESNTFQEPLFCNALFLFPTTFLFFLLLLPSVTFIPSLPLRQPHPLRDGPSFSHKAITLTTHQPSCSSSSIGRAFFIYPLRFLDPQTNSTASFISRFSFSILSSPSCPSGEGLAFLIASSTHFPALSMGLPQPSPNSTSFFAVEFDTTFDPSLGDINDNHVASTSTSASPSRSVDAFSPPFAGIMNLKKYMQTHHIAWVEYRPCNQDGKLYARLLFSSTRPLPLPFLFLKXTFSERLQDFMHVGFTASNGKGSQVITLVQSLAVHDFSRHDLPRDVSLTWTXSMKVGDCFLCYEGDXKIKEMALGVWEGLTAFVVSVLAAMIVVWCFSLTGRNGVVGRTMEQGKLWVSDEXSPTRLSLSEIKSATMGFNRDRLVGEGASAKVYKGYLPFGGDVAVKRFQRQKDLNCLHNPFATEFATMVGCLRHKNLVQLKGWCCEGKELVLVYEFLPNGSLNKVLHRNFNSSIVLSWRQRENIVLGVAAALTYLHEECERQIIHRDVKSCNIMLDADFNAKLGDFGLAEVYEHSCSRREATIPAGTMGYLAPEYVYSGVPTVKSDVYSFGVVVLEVGSGRKPVEDDGSVVVDYVWSLWEKGKLIEGADPRLMGKFDAVDMERMLLVGLLCVHPDHEKRPTVREAARILNKEAPLPVLPPVKPRLRIRPISPQTHHVLGDCLGTDEPPYFTPRSHFY 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium341g00001 693 PANTHER - 67 652 - -
Vium341g00001 693 Pfam Protein kinase domain 375 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00001 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Vium341g00001 693 ProSitePatterns Protein kinases ATP-binding region signature. 380 402 IPR017441 GO:0005524
Vium341g00001 693 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 261 IPR013320 -
Vium341g00001 693 Gene3D - 52 278 - -
Vium341g00001 693 Gene3D Transferase(Phosphotransferase) domain 1 453 650 - -
Vium341g00001 693 FunFam L-type lectin-domain containing receptor kinase VIII.1 453 663 - -
Vium341g00001 693 FunFam L-type lectin-domain containing receptor kinase S.6 343 452 - -
Vium341g00001 693 Gene3D Phosphorylase Kinase; domain 1 342 452 - -
Vium341g00001 693 Pfam Legume lectin domain 59 260 IPR001220 GO:0030246
Vium341g00001 693 SMART serkin_6 374 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00001 693 SUPERFAMILY Protein kinase-like (PK-like) 358 661 IPR011009 -
Vium341g00001 693 ProSiteProfiles Protein kinase domain profile. 374 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium341g00001 693 CDD STKc_IRAK 380 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium341g00001 Vium-Chr341 6228 8370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium341g00001 29 692 Receptor kinase-like Gene Family AT5G42120 48.649 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium341g00001 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium341g00001 - - gmx:100783805 791.571