Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3418g00005 ATGCCATCTCAGGGTGTGTTCATAGGAGAAATGGGAAGAAAACCTAATATTCTGAAATGGTCGCTTGGAGGACCTTCATGGACAGTAGCTCTAGGTCGAAGAGATGCAACAACAGCAAGCGAAAGTGCAGCCAACGCCCAACTCCCTTCTCCGTTCTTCGACCTTCCCACACTCACCAGCGCCTTCGCCGCCAAAGGCTTGAGCGCGTGTGACCTCATTGTGCTCTCCGGCGGCCACAACATAGGTCAAGCACAGTGCCAGTTTTTCAGAGCTCGCATCTACAACGGAAGCAACATCGACATCAGCTTCGTCGCGTCAAGAAGAAGCATTTGCCCTTCCTCCGGTGGGGACACCAACTTGTCTCCTTTGGACTCCCTCACTCCCATTCGTTTCGACAACAAATACTTCTCCGAGCTGGTGGCTGGCCTTGGCCTTCTCATCTCAGATCAAGTGCTCTTCGATGGTGGCTCTTAAGACCCTTTGGTCAGAATCTACAGCGAGAATAATGCTGCATTTTTTGGTGATTTTGGTGAAGCCATGATCAAGATGGGTCATATCACCGAATATAAGGAACCCAATGCCACTACATGGTAA 594 0.5034 MPSQGVFIGEMGRKPNILKWSLGGPSWTVALGRRDATTASESAANAQLPSPFFDLPTLTSAFAAKGLSACDLIVLSGGHNIGQAQCQFFRARIYNGSNIDISFVASRRSICPSSGGDTNLSPLDSLTPIRFDNKYFSELVAGLGLLISDQVLFDGGSXDPLVRIYSENNAAFFGDFGEAMIKMGHITEYKEPNATTW 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3418g00005 197 SUPERFAMILY Heme-dependent peroxidases 21 187 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 PRINTS Plant peroxidase signature 70 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 PRINTS Plant peroxidase signature 23 38 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 PRINTS Plant peroxidase signature 122 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 PRINTS Plant peroxidase signature 138 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 PRINTS Plant peroxidase signature 178 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 ProSiteProfiles Plant heme peroxidase family profile. 13 186 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 Pfam Peroxidase 22 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 FunFam Peroxidase 49 183 - -
Vium3418g00005 197 PRINTS Haem peroxidase superfamily signature 124 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 PRINTS Haem peroxidase superfamily signature 71 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 PRINTS Haem peroxidase superfamily signature 23 35 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 PANTHER PEROXIDASE 72-RELATED 22 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3418g00005 197 Gene3D - 22 188 - -
Vium3418g00005 197 Gene3D Peroxidase, domain 2 49 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3418g00005 Vium-Chr3418 28609 30017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3418g00005 21 187 Peroxidase AT5G05340 54.438 4.12e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3418g00005 K00430 - gmx:100806309 240.736