Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3418g00004 ATGAACCTGGTGAATGTTGCAGCTGTTCCTGGACTGCCCATCGTAGGGAATCTACTGCAGTTGAAGGAGAAGAAACCTTACAAGACATTCGCACAGATGGCTCAAAAACATGGACCCATCTATTCCATCAGAACCGGTTCTTCCAGTATCATTGTTCTCAACTCCACCAATCTTGCCAAGGAGGCCATGGTGACCAGGTTTTCGTCGATTTCAACAAGGAAGCTATCAAAAGCACTGACGATTCTGACTTCTGATAAACGTATGGTTGCCACAAGCGACTACAATGAATTTCACAAAACAGTCAAGAAACATATTCTTGGAAACGTTTTGGGAGCCGCTGCACAGAAGCGGCACCGTCTCAACAGAGAAAACTTGGTGGAAAATATTTTGAGCCAGTTTGGTGAACATGTGAAGACCTCCTCTGATTTGCCAGTTAATTTTAGAAATATATTCGCATCTGAACTTTTTATATTAGCACTGAAGCAAGCTCTGGGAAGTAATATAGAGTCCGTTTATGTGGAGGAGTTTAGCGCTACATTATCAAGAGAGGACTTATATAGGATTCTAGTGCTTGATATGATGGAGGGAGCCATTGAGGTGGATTGGCGAGATTTCTTTCCATACTTGAGGTGGATTCCTAATAGCAGTGTGGAGAACAAAATTCAGAATTTGCATTTCCGGAGAGAGGTTGTCATGAAGGCCTTGATGAATGAGCAGAAGAAGAGAATGGATTCAGGAAAGGTACTGAATTGTTTTTTTGACTACCTAGTATCCGAAGCTAAAGAACTGAGTGAACATGAAATTTCCATGCTACTCTGGGAGACAATTATTGAAACATCTGATACTACATTGGTGACAACAGAATGGGCTATGTATGAACTTGCTAAAGACAAAACTCGTCAGGCACGTTTATATGCGGAGCTGCAAAATGTATGTGGAGAAGAAAAGGTTACAGAGGAGCAATTATCTAAGCTACCTTACTTGGGAGCTGTATTCCATGAAACATTAAGGAAGTATAGTCCAGCTCCAATCGTGCCAATAAGATATGCTCATGAAGATACAGAATTGGGAGGATATCATATTCCTGCTGGAAGCCAGATTGCAATAAATATATATGGATGCAACATGGACAGCAACAAGTGGGAAAATCCTCATGAATGGATACCTGAGAGATTTGTTGATGAAAAATATGATCCCTTGGATTTATACAAGACCATGGCCTTTGGAGCTGGGAAGAGGGTGTGTGCAGGGTCTCTTCAGGCCTCGTTGATATCCTGCACAGCAATTGGGAGATTTGTTCAACAATTTGAGTGGGAGCTGGGACAAGGGGAGGAGGAGAATGTGGATACATTGGGCCTTACAACTCACAGACTCCATCCCCTTCTGGTGAAACTCAGGCCAAGAAATCAATACATCAAGTAG 1422 0.4226 MNLVNVAAVPGLPIVGNLLQLKEKKPYKTFAQMAQKHGPIYSIRTGSSSIIVLNSTNLAKEAMVTRFSSISTRKLSKALTILTSDKRMVATSDYNEFHKTVKKHILGNVLGAAAQKRHRLNRENLVENILSQFGEHVKTSSDLPVNFRNIFASELFILALKQALGSNIESVYVEEFSATLSREDLYRILVLDMMEGAIEVDWRDFFPYLRWIPNSSVENKIQNLHFRREVVMKALMNEQKKRMDSGKVLNCFFDYLVSEAKELSEHEISMLLWETIIETSDTTLVTTEWAMYELAKDKTRQARLYAELQNVCGEEKVTEEQLSKLPYLGAVFHETLRKYSPAPIVPIRYAHEDTELGGYHIPAGSQIAINIYGCNMDSNKWENPHEWIPERFVDEKYDPLDLYKTMAFGAGKRVCAGSLQASLISCTAIGRFVQQFEWELGQGEEENVDTLGLTTHRLHPLLVKLRPRNQYIK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3418g00004 473 Pfam Cytochrome P450 11 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS E-class P450 group I signature 415 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS E-class P450 group I signature 370 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS E-class P450 group I signature 405 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS E-class P450 group I signature 34 53 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS E-class P450 group I signature 58 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS E-class P450 group I signature 329 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS E-class P450 group I signature 287 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 FunFam Ent-kaurene oxidase 2 1 470 - -
Vium3418g00004 473 CDD CYP77_89 36 461 - -
Vium3418g00004 473 PRINTS P450 superfamily signature 330 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS P450 superfamily signature 406 415 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 PRINTS P450 superfamily signature 278 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 408 417 IPR017972 GO:0005506|GO:0016705
Vium3418g00004 473 PANTHER ENT-KAURENE OXIDASE, CHLOROPLASTIC 5 469 IPR044225 GO:0005506|GO:0009686|GO:0010241|GO:0020037|GO:0052615
Vium3418g00004 473 Gene3D Cytochrome P450 6 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3418g00004 473 SUPERFAMILY Cytochrome P450 9 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3418g00004 Vium-Chr3418 15896 18585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3418g00004 2 468 Cytochrome P450 AT5G25900 63.675 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3418g00004 K04122 - gmx:100802970 780.785