Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3418g00002 ATGGAGGCAAAGACCATGAAAACTGTGAAGGAATGGTTCACTTCATCCCAGGTTGTCTTGAGCATGATTCTGGTGCAAGTTCTTATGACTGGGATGCAGTTGTTGTCAAGGGTCATATTGGTTCAAGGAACTTTCATTGCTGCACTTATTGTTTATCGTCACCTTGTTGCTGCTCTTTGTGTTGCTCCCTTTGCACTCTACTTTGAAAGAGGACAACCTAAGAAATTAAACTGTGAGGTCTGGTGTTGGCTCTTCGTCAATGCACTGACAGGGATGACAATGGCTCAAGGATTGTTTTATTATGGTCTGCGAGATACTTCTGCTGCCTACTCTATGAGTTTTCTGAACTTGGTTCCTATAATCACATTCTTTACCTCTATCATACTCAGAATGGAGAAACTGAAGTGGCAAACATGGGTTGGTAAAGCTAAGTCTGTTGGGTCAATTCTGTGTGTTGGAGGAGCATCACTTGGCAGTCTTTACAAAGGGAAGGAATTTTTTCTCGGACACCACCTTCATCGTACTCATCAAACTGCACCACACAAAACCCACATGCTACATGGTACTATCTTTTTGGTCTGCAGCTGCTTCTCCTACACAGCCTGGTTTATTGCACAAGTGAAGTTGCTTAAAGTATTTCCATTGAAGTACTGGGGAACAATGCTAGCATGCATTCTGGCGGCAATTCAAGCAGCAGCAGTTGGTGTTTGCTTAGATTCCAGTAAAGCTGCTTGGAGATTACAGTGGAATCTACAACTCATCACTATAGTCTACTCGGGTGCACTGGCTACTGCTGCTACATTCTGCATAATATCTTGGGCAATAAGAATGAAAGGACCTACTTATCCTCCAATGTTCAATCCTCTGTCTCTTATTTTTGTGGCCTTTTCAGAAGCTCTCATTCTTGGACAACCATTGGGAGTTGGAACGTTGGGTGGCATGGTTTTGATCATAATGGGATTATACTTCTTTTTGTGGGGCAAAAACAATGAGAGCCATGCAGAAGGAACGACCATGGTGGCTGATGGGCTCACTGCAACCCAATCAACATCCACAGTAGTACCAAGTGCTTCTCCCACCCATTCTGTCATTCTTCAAATTCAAAAAACTCAGATTAGTTGA 1122 0.4305 MEAKTMKTVKEWFTSSQVVLSMILVQVLMTGMQLLSRVILVQGTFIAALIVYRHLVAALCVAPFALYFERGQPKKLNCEVWCWLFVNALTGMTMAQGLFYYGLRDTSAAYSMSFLNLVPIITFFTSIILRMEKLKWQTWVGKAKSVGSILCVGGASLGSLYKGKEFFLGHHLHRTHQTAPHKTHMLHGTIFLVCSCFSYTAWFIAQVKLLKVFPLKYWGTMLACILAAIQAAAVGVCLDSSKAAWRLQWNLQLITIVYSGALATAATFCIISWAIRMKGPTYPPMFNPLSLIFVAFSEALILGQPLGVGTLGGMVLIIMGLYFFLWGKNNESHAEGTTMVADGLTATQSTSTVVPSASPTHSVILQIQKTQIS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3418g00002 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 329 - -
Vium3418g00002 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 153 - -
Vium3418g00002 373 PANTHER WAT1-RELATED PROTEIN 18 338 IPR030184 GO:0016020|GO:0022857
Vium3418g00002 373 Pfam EamA-like transporter family 188 325 IPR000620 GO:0016020
Vium3418g00002 373 Pfam EamA-like transporter family 19 152 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3418g00002 Vium-Chr3418 898 8885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3418g00002 1 333 Nodulin-like Gene Family AT5G07050 30.259 1.38e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3418g00002 - - vra:106763417 661.373