Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3418g00001 ATGGAGGCAAAGACCATGAAAACTGTGAAGGAATGGTTCACTTCATCCCAGGTTGTCTTGAGCATGATTCTGGTGCAAGTTCTTATGACTGGGATGCAGTTGTTGTCAAGGGTCATATTGGTTCAAGGAACTTTCATTGCTGCACTTATTGTTTATCGTCACCTTGTTGCTGCTCTTTGTGTTGCTCCCTTTGCACTCTACTTTGAAAGAGGACAACCTAAGAAATTAAACTGTGAGGTCTGGTGTTGGCTCTTCGTCAATGCACTGACAGGGATGACAATGGCTCAAGGATTGTTTTATTATGGTCTGCGAGATACTTCTGCTGCCTACTCTATGAGTTTTCTGAACTTGGTTCCTATAATCACATTCTTTACCTCTATCATACTCAGAATGGAGAAACTGAAGTGGCAAACATGGGTTGGTAAAGCTAAGTCTGTTGGGTCAATTCTGTGTGTTGGAGGAGCATCACTTGGCAGTCTTTACAAAGGGAAGGAATTTTTTCTCGGACACCACCTTCATCGTACTCATCAAACTGCACCACACAAAACCCACATGCTACATGGTACTATCTTTTTGGTCTGCAGCTGCTTCTCCTACACAGCCTGGTTTATTGCACAATACTGGGGAACAATGCTAGCATGCATTCTGGCGGCAATTCAAGCAGCAGCAGTTGGTGTTTGCTTAGATTCCAGTAAAGCTGCTTGGAGATTACAGTGGAATCTACAACTCATCACTATAGTCTACTCGGGTGCACTGGCTACTGCTGCTACATTCTGCATAATATCTTGGGCAATAAGAATGAAAGGACCTACTTATCCTCCAATGTTCAATCCTCTGTCTCTTATTTTTGTGGCCTTTTCAGAAGCTCTCATTCTTGGACAACCATTGGGAGTTGGAACGTTGGGTGGCATGGTTTTGATCATAATGGGATTATACTTCTTTTTGTGGGGCAAAAACAATGAGAGCCATGCAGAAGGAACGACCATGGTGGCTGATGGGCTCACTGCAACCCAATCAACATCCACAGTAGTACCAAGTGCTTCTCCCACCCATTCTGTCATTCTTCAAATTCAAAAAACTCAGATTAGTTGA 1092 0.4332 MEAKTMKTVKEWFTSSQVVLSMILVQVLMTGMQLLSRVILVQGTFIAALIVYRHLVAALCVAPFALYFERGQPKKLNCEVWCWLFVNALTGMTMAQGLFYYGLRDTSAAYSMSFLNLVPIITFFTSIILRMEKLKWQTWVGKAKSVGSILCVGGASLGSLYKGKEFFLGHHLHRTHQTAPHKTHMLHGTIFLVCSCFSYTAWFIAQYWGTMLACILAAIQAAAVGVCLDSSKAAWRLQWNLQLITIVYSGALATAATFCIISWAIRMKGPTYPPMFNPLSLIFVAFSEALILGQPLGVGTLGGMVLIIMGLYFFLWGKNNESHAEGTTMVADGLTATQSTSTVVPSASPTHSVILQIQKTQIS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3418g00001 363 PANTHER WAT1-RELATED PROTEIN 18 328 IPR030184 GO:0016020|GO:0022857
Vium3418g00001 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 153 - -
Vium3418g00001 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 319 - -
Vium3418g00001 363 Pfam EamA-like transporter family 19 152 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3418g00001 Vium-Chr3418 898 8886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3418g00001 1 323 Nodulin-like Gene Family AT5G07050 29.683 9.01e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3418g00001 - - vra:106763417 636.336