Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3417g00002 | ATGGACCCCTTCAACAATTCCTACTATAATTTTTCTGGAAAAACTGCGTTTTCCATTTTTTCACCGAAAAAGATTGGGAAGAATTTTGAAAGGATGTTTCCATCGAGAAGAGTTATGGCGTTCTATATGATGAGTGAGGTATTATCTGTGATTTGTCGCGCCATGCCTCCTTCCCTCATTGAGGAACGACAGGCTTTGCTCCACAGTGGTTGGTGGAATGATTACCTAAATATCTCAGACTACCGAAATATCTCAGATCATTGTTATTGGCCGGGTATCTTTTGCAATGAAACTCTAAGAAGTGTTGCTAGTATTGACAGTGGGTCCATCAAGATTCCTTCATCAAAAGAATTGCTTTGGATTGAGAAGTTGAACGTCAGTGCCTTCCCCAATTTAGTCTCTCTGCATCTATCTGGAATGGGTCTTAGAGGAACCATCCCCACAGATATAGGTTCTCTTACATACCTTACCTCTCTTGATTTGTCCAACAATGGTCTCCAAGAATCTCTTTCTTGTTCTCATCTAATTGCAGGTTCAATCCCTCCAACTTTAGGTCGATTGGAGAACTTGGTACATCTCTGCCTTCATTCTAATCAACTAGAAGGTCACATACCCGAGCATTTAGGAAATTTGTCCAAATTAGAAGCTTTGCAACTATCTCATAACAAAATTTCGGGTTTATTACCTCCCAAACTTTTGCAAATGGACAAAATGTCCTCTTTAAATCTCTCGTCCAATCAATTATGTGGTTCAATCCCATTAAAAACAATGAGATGTCCCTTTGCTACAATAGTTGATTTGAGTCATAACTTGTTTAATGGAAATATAACCTCTCAAATTGGTTGTGTAAATGACCTTAATCTTAGTCACAATTTTCTTGTTGGTGAGATTCCATCTCCTTTTACATGGAGCTCCGAACTTAGACGATTGGATCTCAGTTATAATAATCTTTCAGGTAAAGTACACAAGGAACTTTCTAGTCTATCATACATAAACCTTGCATACAATTCCTTGGACTTCTCACAAGACCTTGACTCAAAATTGAAGGTACCAGACTATTGTTTTTTCAAGGAAGACTCGTTAATTGATGATAATCACATGCTAAATTTCACATATTGCCACTTATTGAACCACACGAATCCTCAAACTAGAAAAAGTAATCCCATGATCATGTTAATTATTCTTCCTATAATTTTCTTCAATCTTTTTGTACTCCTTCCATTAATATATTTCTCAAGATGTATTCCTAAGAAAAATTGTGGACGAATATCAACAAAGAATGGAGACTTGTTTTCTATATTCAATTATGATGGTAAAATTGCATTTGAGGATATCATTGAAGCAACTGAAGACTTTGACCTCAAGTACTGTATTGGGACAGGCGGATATGGTAGTGTTTATAGAGCACAATTACCCAGTGGTAACGTTGTAGCATTAAAAAAGCTTCATCGAATGGAATCTCAAAATCCATCTTTCAACAAAAGTTTCCACAATGAGGTGAAAATGTTAACAGCAATTCGTCATAGAAACATTGTAAAGCTTCATGGCTTTTGCCTCCACAATCAATTCATGTTTCTTATATATCAATACATGGAAAGAGGTAGTTTATTTTATATTTTGAATAACGATATGGAAGCTCATGAGTTGAATTGGAGTAAAAGGGTAAATGTCATTAAAGGGATGGCACAAGCTTTAAGCTACATGCATCATGATTGTACCACACCAATGGTTCATCGAGATGTAACAAGTAGTAATGTTCTATTAAACTCACAATTAGAGGCTTGTGTCTCAGACTTTGGTACAGCTAGACTCCTGGATCCTGATTCTTCAAATCAAACCTTGGTAGTTGGCACTTATGGCTACATTGCCCCAGAGTTTGCTTATACATTGACTGTGACAGAAAAATGTGATGTTTATAGTTTTGGGATAGTGACTTTGGAGACATTAATGGGAAAACATCCTAGAGAGTTAATCTCAACTTTATCAAACCCAATAACTCAAAATATGTTGGTGAAAGATCTCTTGGATTCACGTCTCCCTCTTCCTCTTGAGAAAGATGCTAAAGATGTAAATCTTATGATAAATGTAGGATTATCATGTTTGTGCTCCAAACCAAACTTGAGGCCATCAATGCAACAAGTGATTGAGAAACTCTTTAGTTTTACATTGCCATTAGATTTGCCTTTCCATGAAGTTTCCATCCATCAAGTGATGAGCCAAGACATATTTCATCTTTCATCCAAGTTTCAAGAATGA | 2256 | 0.3635 | MDPFNNSYYNFSGKTAFSIFSPKKIGKNFERMFPSRRVMAFYMMSEVLSVICRAMPPSLIEERQALLHSGWWNDYLNISDYRNISDHCYWPGIFCNETLRSVASIDSGSIKIPSSKELLWIEKLNVSAFPNLVSLHLSGMGLRGTIPTDIGSLTYLTSLDLSNNGLQESLSCSHLIAGSIPPTLGRLENLVHLCLHSNQLEGHIPEHLGNLSKLEALQLSHNKISGLLPPKLLQMDKMSSLNLSSNQLCGSIPLKTMRCPFATIVDLSHNLFNGNITSQIGCVNDLNLSHNFLVGEIPSPFTWSSELRRLDLSYNNLSGKVHKELSSLSYINLAYNSLDFSQDLDSKLKVPDYCFFKEDSLIDDNHMLNFTYCHLLNHTNPQTRKSNPMIMLIILPIIFFNLFVLLPLIYFSRCIPKKNCGRISTKNGDLFSIFNYDGKIAFEDIIEATEDFDLKYCIGTGGYGSVYRAQLPSGNVVALKKLHRMESQNPSFNKSFHNEVKMLTAIRHRNIVKLHGFCLHNQFMFLIYQYMERGSLFYILNNDMEAHELNWSKRVNVIKGMAQALSYMHHDCTTPMVHRDVTSSNVLLNSQLEACVSDFGTARLLDPDSSNQTLVVGTYGYIAPEFAYTLTVTEKCDVYSFGIVTLETLMGKHPRELISTLSNPITQNMLVKDLLDSRLPLPLEKDAKDVNLMINVGLSCLCSKPNLRPSMQQVIEKLFSFTLPLDLPFHEVSIHQVMSQDIFHLSSKFQE | 751 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3417g00002 | 751 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 416 | 530 | - | - | |
Vium3417g00002 | 751 | SUPERFAMILY | L domain-like | 85 | 338 | - | - | |
Vium3417g00002 | 751 | Gene3D | Ribonuclease Inhibitor | 283 | 350 | IPR032675 | - | |
Vium3417g00002 | 751 | Gene3D | Phosphorylase Kinase; domain 1 | 420 | 530 | - | - | |
Vium3417g00002 | 751 | Pfam | Leucine rich repeat | 189 | 248 | IPR001611 | GO:0005515 | |
Vium3417g00002 | 751 | Pfam | Protein kinase domain | 457 | 717 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium3417g00002 | 751 | SUPERFAMILY | Protein kinase-like (PK-like) | 439 | 721 | IPR011009 | - | |
Vium3417g00002 | 751 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 576 | 588 | IPR008266 | GO:0004672|GO:0006468 | |
Vium3417g00002 | 751 | Gene3D | Ribonuclease Inhibitor | 59 | 172 | IPR032675 | - | |
Vium3417g00002 | 751 | Gene3D | Ribonuclease Inhibitor | 173 | 282 | IPR032675 | - | |
Vium3417g00002 | 751 | PRINTS | Leucine-rich repeat signature | 156 | 169 | - | - | |
Vium3417g00002 | 751 | PRINTS | Leucine-rich repeat signature | 211 | 224 | - | - | |
Vium3417g00002 | 751 | ProSiteProfiles | Protein kinase domain profile. | 452 | 722 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium3417g00002 | 751 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 181 | 276 | - | - | |
Vium3417g00002 | 751 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 127 | 720 | - | - | |
Vium3417g00002 | 751 | ProSitePatterns | Protein kinases ATP-binding region signature. | 458 | 480 | IPR017441 | GO:0005524 | |
Vium3417g00002 | 751 | ProSiteProfiles | Leucine-rich repeat profile. | 213 | 234 | IPR001611 | GO:0005515 | |
Vium3417g00002 | 751 | FunFam | MDIS1-interacting receptor like kinase 2 | 531 | 723 | - | - | |
Vium3417g00002 | 751 | Gene3D | Transferase(Phosphotransferase) domain 1 | 531 | 723 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3417g00002 | Vium-Chr3417 | 2201 | 5020 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3417g00002 | 132 | 624 | Receptor kinase-like Gene Family | AT4G08850 | 38.246 | 2.24e-104 | 341 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vium3417g00002 | Pkinase | 4.6e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3417g00002 | - | - | vun:114166569 | 978.008 |