Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3417g00002 ATGGACCCCTTCAACAATTCCTACTATAATTTTTCTGGAAAAACTGCGTTTTCCATTTTTTCACCGAAAAAGATTGGGAAGAATTTTGAAAGGATGTTTCCATCGAGAAGAGTTATGGCGTTCTATATGATGAGTGAGGTATTATCTGTGATTTGTCGCGCCATGCCTCCTTCCCTCATTGAGGAACGACAGGCTTTGCTCCACAGTGGTTGGTGGAATGATTACCTAAATATCTCAGACTACCGAAATATCTCAGATCATTGTTATTGGCCGGGTATCTTTTGCAATGAAACTCTAAGAAGTGTTGCTAGTATTGACAGTGGGTCCATCAAGATTCCTTCATCAAAAGAATTGCTTTGGATTGAGAAGTTGAACGTCAGTGCCTTCCCCAATTTAGTCTCTCTGCATCTATCTGGAATGGGTCTTAGAGGAACCATCCCCACAGATATAGGTTCTCTTACATACCTTACCTCTCTTGATTTGTCCAACAATGGTCTCCAAGAATCTCTTTCTTGTTCTCATCTAATTGCAGGTTCAATCCCTCCAACTTTAGGTCGATTGGAGAACTTGGTACATCTCTGCCTTCATTCTAATCAACTAGAAGGTCACATACCCGAGCATTTAGGAAATTTGTCCAAATTAGAAGCTTTGCAACTATCTCATAACAAAATTTCGGGTTTATTACCTCCCAAACTTTTGCAAATGGACAAAATGTCCTCTTTAAATCTCTCGTCCAATCAATTATGTGGTTCAATCCCATTAAAAACAATGAGATGTCCCTTTGCTACAATAGTTGATTTGAGTCATAACTTGTTTAATGGAAATATAACCTCTCAAATTGGTTGTGTAAATGACCTTAATCTTAGTCACAATTTTCTTGTTGGTGAGATTCCATCTCCTTTTACATGGAGCTCCGAACTTAGACGATTGGATCTCAGTTATAATAATCTTTCAGGTAAAGTACACAAGGAACTTTCTAGTCTATCATACATAAACCTTGCATACAATTCCTTGGACTTCTCACAAGACCTTGACTCAAAATTGAAGGTACCAGACTATTGTTTTTTCAAGGAAGACTCGTTAATTGATGATAATCACATGCTAAATTTCACATATTGCCACTTATTGAACCACACGAATCCTCAAACTAGAAAAAGTAATCCCATGATCATGTTAATTATTCTTCCTATAATTTTCTTCAATCTTTTTGTACTCCTTCCATTAATATATTTCTCAAGATGTATTCCTAAGAAAAATTGTGGACGAATATCAACAAAGAATGGAGACTTGTTTTCTATATTCAATTATGATGGTAAAATTGCATTTGAGGATATCATTGAAGCAACTGAAGACTTTGACCTCAAGTACTGTATTGGGACAGGCGGATATGGTAGTGTTTATAGAGCACAATTACCCAGTGGTAACGTTGTAGCATTAAAAAAGCTTCATCGAATGGAATCTCAAAATCCATCTTTCAACAAAAGTTTCCACAATGAGGTGAAAATGTTAACAGCAATTCGTCATAGAAACATTGTAAAGCTTCATGGCTTTTGCCTCCACAATCAATTCATGTTTCTTATATATCAATACATGGAAAGAGGTAGTTTATTTTATATTTTGAATAACGATATGGAAGCTCATGAGTTGAATTGGAGTAAAAGGGTAAATGTCATTAAAGGGATGGCACAAGCTTTAAGCTACATGCATCATGATTGTACCACACCAATGGTTCATCGAGATGTAACAAGTAGTAATGTTCTATTAAACTCACAATTAGAGGCTTGTGTCTCAGACTTTGGTACAGCTAGACTCCTGGATCCTGATTCTTCAAATCAAACCTTGGTAGTTGGCACTTATGGCTACATTGCCCCAGAGTTTGCTTATACATTGACTGTGACAGAAAAATGTGATGTTTATAGTTTTGGGATAGTGACTTTGGAGACATTAATGGGAAAACATCCTAGAGAGTTAATCTCAACTTTATCAAACCCAATAACTCAAAATATGTTGGTGAAAGATCTCTTGGATTCACGTCTCCCTCTTCCTCTTGAGAAAGATGCTAAAGATGTAAATCTTATGATAAATGTAGGATTATCATGTTTGTGCTCCAAACCAAACTTGAGGCCATCAATGCAACAAGTGATTGAGAAACTCTTTAGTTTTACATTGCCATTAGATTTGCCTTTCCATGAAGTTTCCATCCATCAAGTGATGAGCCAAGACATATTTCATCTTTCATCCAAGTTTCAAGAATGA 2256 0.3635 MDPFNNSYYNFSGKTAFSIFSPKKIGKNFERMFPSRRVMAFYMMSEVLSVICRAMPPSLIEERQALLHSGWWNDYLNISDYRNISDHCYWPGIFCNETLRSVASIDSGSIKIPSSKELLWIEKLNVSAFPNLVSLHLSGMGLRGTIPTDIGSLTYLTSLDLSNNGLQESLSCSHLIAGSIPPTLGRLENLVHLCLHSNQLEGHIPEHLGNLSKLEALQLSHNKISGLLPPKLLQMDKMSSLNLSSNQLCGSIPLKTMRCPFATIVDLSHNLFNGNITSQIGCVNDLNLSHNFLVGEIPSPFTWSSELRRLDLSYNNLSGKVHKELSSLSYINLAYNSLDFSQDLDSKLKVPDYCFFKEDSLIDDNHMLNFTYCHLLNHTNPQTRKSNPMIMLIILPIIFFNLFVLLPLIYFSRCIPKKNCGRISTKNGDLFSIFNYDGKIAFEDIIEATEDFDLKYCIGTGGYGSVYRAQLPSGNVVALKKLHRMESQNPSFNKSFHNEVKMLTAIRHRNIVKLHGFCLHNQFMFLIYQYMERGSLFYILNNDMEAHELNWSKRVNVIKGMAQALSYMHHDCTTPMVHRDVTSSNVLLNSQLEACVSDFGTARLLDPDSSNQTLVVGTYGYIAPEFAYTLTVTEKCDVYSFGIVTLETLMGKHPRELISTLSNPITQNMLVKDLLDSRLPLPLEKDAKDVNLMINVGLSCLCSKPNLRPSMQQVIEKLFSFTLPLDLPFHEVSIHQVMSQDIFHLSSKFQE 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3417g00002 751 FunFam Leucine-rich repeat receptor protein kinase MSP1 416 530 - -
Vium3417g00002 751 SUPERFAMILY L domain-like 85 338 - -
Vium3417g00002 751 Gene3D Ribonuclease Inhibitor 283 350 IPR032675 -
Vium3417g00002 751 Gene3D Phosphorylase Kinase; domain 1 420 530 - -
Vium3417g00002 751 Pfam Leucine rich repeat 189 248 IPR001611 GO:0005515
Vium3417g00002 751 Pfam Protein kinase domain 457 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3417g00002 751 SUPERFAMILY Protein kinase-like (PK-like) 439 721 IPR011009 -
Vium3417g00002 751 ProSitePatterns Tyrosine protein kinases specific active-site signature. 576 588 IPR008266 GO:0004672|GO:0006468
Vium3417g00002 751 Gene3D Ribonuclease Inhibitor 59 172 IPR032675 -
Vium3417g00002 751 Gene3D Ribonuclease Inhibitor 173 282 IPR032675 -
Vium3417g00002 751 PRINTS Leucine-rich repeat signature 156 169 - -
Vium3417g00002 751 PRINTS Leucine-rich repeat signature 211 224 - -
Vium3417g00002 751 ProSiteProfiles Protein kinase domain profile. 452 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3417g00002 751 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 276 - -
Vium3417g00002 751 PANTHER LEUCINE RICH REPEAT KINASE 2 127 720 - -
Vium3417g00002 751 ProSitePatterns Protein kinases ATP-binding region signature. 458 480 IPR017441 GO:0005524
Vium3417g00002 751 ProSiteProfiles Leucine-rich repeat profile. 213 234 IPR001611 GO:0005515
Vium3417g00002 751 FunFam MDIS1-interacting receptor like kinase 2 531 723 - -
Vium3417g00002 751 Gene3D Transferase(Phosphotransferase) domain 1 531 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3417g00002 Vium-Chr3417 2201 5020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3417g00002 132 624 Receptor kinase-like Gene Family AT4G08850 38.246 2.24e-104 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3417g00002 Pkinase 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3417g00002 - - vun:114166569 978.008