Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3416g00012 ATGAACGACGCAGATGTCTCCAGGCAAATCCAGCAGATGGTGCGGTTCATCCGCCAGGAAGCAGAGGAAAAAGCCAACGAGATCTCTGTCTCGGCCGAAGAGGAATTCAATATCGAGAAGCTGCAGTTAGTTGAAGCCGAGAAGAAGAAGATCAGGCAAGAGTACGAACGCAAAGAGCGTCAAGTGGAAATTCGCAAGAAGATTGAGTACTCGATGCAGCTGAACGCTTCTCGAATTAAAGTTCTTCAAGCTCAGGATGACGTGATCAGTTCCATGAAAGAAGCTGCATCCAAGGAACTTTTGAGTGTGAGTCATCATCATGATCATGTGTACAGAAACCTTCTTAAAGATCTCATTGTTCAGTGTTTGCTAAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAGGATCTGCACTTGGTAGAGCATGTGCTGGATTCTGCTGCACAGGAGTATGCTGACAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAATCAAGTCTATCTTCCTCCTGGACCCAATCATCATAATGTTCATGATATCTTCTGTTCTGGTGGCGTGGTGCTAGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTTCGTAAAAAGCTCCCTGAGATCCGAAAGCAGCTCTTTGGACAAGTTGTTGCTTGA 696 0.4468 MNDADVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLSVSHHHDHVYRNLLKDLIVQCLLRLKEPSVLLRCRKEDLHLVEHVLDSAAQEYADKANVDPPEIIVDNQVYLPPGPNHHNVHDIFCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQVVA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3416g00012 231 SUPERFAMILY V-type ATPase subunit E-like 87 227 - -
Vium3416g00012 231 Gene3D - 92 229 IPR038495 -
Vium3416g00012 231 Pfam ATP synthase (E/31 kDa) subunit 16 226 IPR002842 GO:0033178|GO:0046961|GO:1902600
Vium3416g00012 231 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 228 IPR002842 GO:0033178|GO:0046961|GO:1902600
Vium3416g00012 231 Coils Coil 38 61 - -
Vium3416g00012 231 Hamap V-type proton ATPase subunit E [atpE]. 8 227 IPR002842 GO:0033178|GO:0046961|GO:1902600
Vium3416g00012 231 Gene3D - 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3416g00012 Vium-Chr3416 68686 74445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3416g00012 1 231 Primary Pumps ATPases(2) AT4G11150 76.190 6.74e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3416g00012 K02150 - gmx:111064655 430.254