Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3414g00003 ATGTCTTCCTCTTCCTCCTTCTCCCCCGCCACTCTCACCCCTGAGCAAGAACTCTCCGTCATCGTCGCCGCTCTCACCAACGTCGTCGCCGGCTCCACTTCCTCCGACGTCGTCTCCCTCCCGGACTTCCGCCTCCCCAACGCCTCTCAGCCTCTCGCCGGAAACACCTTCTCGCCGCCCACTATGGACACGTGTCGCGAGTGCAACATCGCTGGCTGTTTGGGCTGCAATTTCTTCCCCGAGGAGAAAAAGAAACAGAAGAGGGTCAAGAAGAAATACAGAGGCGTGAGGCAGAGGCCATGGGGTAAGTGGGCGGCCGAGATTCGAGACCCACGCCGTGCGGCACGGGTCTGGCTGGGAACTTTCAACACGGCCGAGGATGCTGCCCGGGCCTACGACAAGGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTAGTGGATGAGTCCTTAAGCATGCAGCAGAGCAAGCCAGAGAGGGTTGCAGCTGAAGAACAAATAAAGAACGAGAATCTCAACCAGAGCATGGAAATGGAGACGCTGGAATTCGGAAACAAAGATACTGAATTCTGGGACAGGATTGGCGAAGCTGATTTTCATCAGCTGATGATGCTGATGGATTTCACTGGAGATTCTTCCGACTCTGCCACCGGGAACACTCTTAGTTCCTGA 684 0.5658 MSSSSSFSPATLTPEQELSVIVAALTNVVAGSTSSDVVSLPDFRLPNASQPLAGNTFSPPTMDTCRECNIAGCLGCNFFPEEKKKQKRVKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEDAARAYDKAAIEFRGPRAKLNFPLVDESLSMQQSKPERVAAEEQIKNENLNQSMEMETLEFGNKDTEFWDRIGEADFHQLMMLMDFTGDSSDSATGNTLSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3414g00003 227 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Vium3414g00003 227 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Vium3414g00003 227 FunFam Ethylene-responsive transcription factor 2 91 150 - -
Vium3414g00003 227 CDD AP2 93 149 IPR001471 GO:0003700|GO:0006355
Vium3414g00003 227 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Vium3414g00003 227 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Vium3414g00003 227 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Vium3414g00003 227 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Vium3414g00003 227 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Vium3414g00003 227 PANTHER DNA-BINDING DOMAIN 67 181 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3414g00003 Vium-Chr3414 40303 41293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3414g00003 12 157 AP2-EREBP Transcription Factor Family AT4G34410 48.438 9.79e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3414g00003 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3414g00003 - - gmx:100820426 350.903