Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium340g00001 ATGGCTAAGGCAGAAAAACCGAAATCTGGGTGTTTCCCTGGCTTACTACGTGTGCTACTATGTGCTGGAAATGCAACTAGTCCTCCAGTGCACCCCTCTGATCATTTCACAGAATCAGATGATTCAGAAAAAGCACATTCCACCAAAGAAACCGTGGTGGTGAAAGATGGTTCAACTCCTGGAGTGGTGGCAAGGTTAATGGGGTTGGATTCACTTCCAAACTCCAAATGGGCAGTGAAAGGAGGGAGCCCAGATTCCGTTCCTAGAAGCAGGTCAGTGAACTTTGTTGATTACTTGCTTGAGTTTGATGCAAGCCATTCCATTCACAGAAGAGTGAAGACGTCGTCATCGTTCAGAGAGGTTCCTGGTTTGTTTCAGAACCAAAAGGGTAATAACCTCTTTGTGCTTTGCATGGATGGTGACAAAGACGAAGAGGTGAGGAAAATGGAAACGGGTTTGGGAGAAATGAGGAAGGGGAAGAGGCAGGGGAGTAAGAACAAGGAGAGTGTTAGTGTGAAGAAAGAGATAAATGTAGGTAAGAACAGGAAAATTTCAAAGCTGAAGAATGAGCCAAGGAGAGACCCTTCTTCTAAGCATGGTTCAAAGGGTCGAAATCTTGAAGGTAATAAAGATTTGTCTTCTGTGTCCTCAGGTTTCTCTAAGTGTAGTTCTTGTAGTAATAGACAAAATGGCGCTGCTTCAAGATCAAGGTCAAACACTTATTTGCCAAACAAGCACAAGAAGGAGCTTGTGGAAACAAAAGACAAGAGGAACATGAGAAACCAGAAGTTACTCTTGAAGGTTGAAAGTGAATGCAGCTTGGAACATCGCAGTCCAGTTTCAGTTGCAGATAGCAATGACTATCCTTTCCTTTATGAAAAAGATTTTCTAGATGGTTCAAGCACCACGGCTTCAAAGTCAAAGAGGGTATCTCCATCAATGTTGTCCTTGGATGGTGATGTTGAAGACAGTGCAAGTACTAATAAAGATCATACCTTCATAGATGTCAACAAAGAAGCAGAGTATCTCTCAGAAATGATGTTGCAGATTCGTACTTTGACAGAACACGATGTAAGAGAGTCAGATTATACCTTAAAACGTATGCGTGAGAGTGAAAGCTTTAGAGATATTTGCTTGGTGTTTGAGCATAAAATTTTCGACCATTTATTATATGAGGTCGTCAATGAATTTTCTGAACTTCGTAGTTGA 1209 0.4169 MAKAEKPKSGCFPGLLRVLLCAGNATSPPVHPSDHFTESDDSEKAHSTKETVVVKDGSTPGVVARLMGLDSLPNSKWAVKGGSPDSVPRSRSVNFVDYLLEFDASHSIHRRVKTSSSFREVPGLFQNQKGNNLFVLCMDGDKDEEVRKMETGLGEMRKGKRQGSKNKESVSVKKEINVGKNRKISKLKNEPRRDPSSKHGSKGRNLEGNKDLSSVSSGFSKCSSCSNRQNGAASRSRSNTYLPNKHKKELVETKDKRNMRNQKLLLKVESECSLEHRSPVSVADSNDYPFLYEKDFLDGSSTTASKSKRVSPSMLSLDGDVEDSASTNKDHTFIDVNKEAEYLSEMMLQIRTLTEHDVRESDYTLKRMRESESFRDICLVFEHKIFDHLLYEVVNEFSELRS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium340g00001 402 PANTHER OS05G0128300 PROTEIN 1 400 - -
Vium340g00001 402 MobiDBLite consensus disorder prediction 151 258 - -
Vium340g00001 402 MobiDBLite consensus disorder prediction 242 258 - -
Vium340g00001 402 MobiDBLite consensus disorder prediction 151 206 - -
Vium340g00001 402 MobiDBLite consensus disorder prediction 207 240 - -
Vium340g00001 402 Pfam DUF761-associated sequence motif 59 76 IPR032795 -
Vium340g00001 402 MobiDBLite consensus disorder prediction 27 50 - -
Vium340g00001 402 MobiDBLite consensus disorder prediction 301 323 - -
Vium340g00001 402 MobiDBLite consensus disorder prediction 34 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium340g00001 Vium-Chr340 2228 4197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium340g00001 1 397 TRM (TON1 Recruiting Motif) Superfamily AT5G01370 27.115 1.48e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium340g00001 - - gmx:102668583 493.041