Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3407g00001 ATGAAGTTTCTTCCTCTTCGTTTTTCCTTTCTTTTTGCCTTCCTAATCGCGTTCAGCCTCGTCCAAACCTCAGCAACAACGCTTCCCAAACATCACAAGAATGAAGAAAGCGATGGGCATAGTAGACTTCATCGACCCTCTTCACGATCCCTTCTGTCTTTTCCACTTAGGGTTGCAACGACGGCACTGGTTGTGACCCTAGATGGGACTATGTATTTGGTGGACAACTCTCCTGGTTCCATGAAGGTGATATGGTCATTCTCTACAGGATCGCCCATCTACCAATCGTATAGAGCTCCCGTAGAACGGGATACTGATAAAGAAAATGCATCTGCAACACTAATTAGTGGATTCGTGGAATGTGGGGATGACTGGTCATTGTACATGCACGACAGACACTTTGGTAAAATGAGAATATCAGAATCTATAGCAGAATATGTAGCTCGTACTCCTACCCTTTCAGATGATGGAGCAGTGACACTTGGATCTAAAAGAAGCACTTTGTTTGAAGTTGATGCTAAAACTGGATCAATCATTCAAGTCCATGCGATGCCTGATCCTGTTAAACCTTGGAGTGATGGGAGGCAAAATGTTACAAATAGGGATCTTGCTGATCCTGTGAAACTAAATTCACCACAGCTGCTGCTTAAGATTTTTAGGACAGATTATTCCCTTCAATCTGTTAGTCCGAGCTCAGAAATAGTTTTGTGGACTATGGCATTAGCTGAATTTCAGGCTGTATTATTATGCCAACATTCCTCTTCTGATATAGAGGATGAATATGTTTCTGATAGTGGCCTCAATTTCACCATGCCATACCCCTGTCAAGAGATACGACAAGTCTTCCGCCTGAAAAAGAATTTTCTATTTGAACCTTCACTAATGCTTCCTTTGCAGCCAAATATTGATAGATTATTCAATGGTGACGATGATAATATGATGCTCCCTCAACCTCTCATCAAGATTACTACACCAAGGGAAGTTTATTTGAACAGGACAATTGAATGGCCAACTCCATTACCTCTTGTATTGTTTACCATCTTTCTGTTGGTAATTTCACTCATCTATCCTCTAGTGATTAAGGATCAAGAAACACCGAAGGACCAAAATAGTGAGTCTGAATTAAAAAGTTCACCTGCTAAGAAAAAGAAAACACATAAATCAGGAAGGAAAAATATGTCTTCAGAGAATGAGAAGGTTCTGACAGAAAAAGATAATGATAGAGAAGTATGGAAGCACTTCAATCATGTTAATGAAAATGTTGATGGACGAAGGATTGGTAAATTATTTGTTTCGAACAAAGAGATTGCTAAGGGAAGCAATGGCACCATTGTGCTTGAGGGTATATACGAAAGTCGAGCAGTTGCTATCAAACGTCTTGTCAAGGCTCACAATGACATAGCTTTTAAAGAAATAGAAAACCTTATCATGTCTGATTGTCATCCAAATATTGTTCGATGGCATGGTGTGGAGAATGATAACGATTTTGTTTACCTTGCTTTGGAACGATGTACATGCAATTTAGATGATTTGGTTCAAATTTATTCAGATATATCAGTAAACTCTACGTTTAGGAAGGACCAAGGTATTGGATGTTTGATTAAGTCCCAAATGGATACGTGGAAGGATAGTACACAGTGTCTTTGGAAGGAAAATGGCTATCCATCTCCTCTATTACTAAAACTGATGAGGGACATTGTTTCCGGGGTCATCCATTTGCATGAATTAGGAATAATACATCGAGATATGAAACCACAAAATGTTCTAATAACCAAGGAAAGATCCTTATGTGCTAAACTTTCTGATATGGGAATTAGCAAATGTCTTCTTGAAAATATGTCTTCTCTGGGTAATAATGCAACGGGTGGTGGCAGTTCAGGTTGGCAAGCACCAGAACAACTTGTTCAAGGGCGTCAAACACGGGCAGTAGATATATTCAGTTTAGGTTGCGTCTTCTTTTTCTGCATTACTCGGGGAAGACATCCATTTGGAGAACGTATTGAACGGGATATCAATATTTTGAAAAATCACATGGACCTTTTCTTAGTGGAGTTCATTCCTGAAGCCAAAGATCTTATTAGTCGTTTACTAAATCCTTACCCTGATCTAAGGCCAAAGGCGACTGAAGTATTGTACCATCCTTTTTTCTGGAGTTCCGAGATGCGGCTTTCCTTTTTGCGTGACACCAGTGATAGGGTGGAAGTAGAAAATAGAGAGACTAGTTCTGATCTTTTGGTGACATTAGAAAGCATTGCCACAGATGCCTTGGGTGGAAAATGGGATGAAAGGATGGAACCAGCTTTCATTGCTAACATCGGTCATTATCGGCGGTATAATTTCAACAGTGTTCGAGACTTGTTACGAGTTATGAGAAACAAACTAAATCATTACAGAGAATTGCCTCAAGAAATCCAGGAACTTGTAGGACCTGTTCCCGAAGGATTCTACGAATACTTTGCAAATAGATATCCAAGACTCTTGATTGAGGTGTATAAAGTTATACTTCATTATTGCAAGGAGGAAGAATGTTTCCAAAGATATTTTAGATGTGTTGATTAG 2559 0.3939 MKFLPLRFSFLFAFLIAFSLVQTSATTLPKHHKNEESDGHSRLHRPSSRSLLSFPLRVATTALVVTLDGTMYLVDNSPGSMKVIWSFSTGSPIYQSYRAPVERDTDKENASATLISGFVECGDDWSLYMHDRHFGKMRISESIAEYVARTPTLSDDGAVTLGSKRSTLFEVDAKTGSIIQVHAMPDPVKPWSDGRQNVTNRDLADPVKLNSPQLLLKIFRTDYSLQSVSPSSEIVLWTMALAEFQAVLLCQHSSSDIEDEYVSDSGLNFTMPYPCQEIRQVFRLKKNFLFEPSLMLPLQPNIDRLFNGDDDNMMLPQPLIKITTPREVYLNRTIEWPTPLPLVLFTIFLLVISLIYPLVIKDQETPKDQNSESELKSSPAKKKKTHKSGRKNMSSENEKVLTEKDNDREVWKHFNHVNENVDGRRIGKLFVSNKEIAKGSNGTIVLEGIYESRAVAIKRLVKAHNDIAFKEIENLIMSDCHPNIVRWHGVENDNDFVYLALERCTCNLDDLVQIYSDISVNSTFRKDQGIGCLIKSQMDTWKDSTQCLWKENGYPSPLLLKLMRDIVSGVIHLHELGIIHRDMKPQNVLITKERSLCAKLSDMGISKCLLENMSSLGNNATGGGSSGWQAPEQLVQGRQTRAVDIFSLGCVFFFCITRGRHPFGERIERDINILKNHMDLFLVEFIPEAKDLISRLLNPYPDLRPKATEVLYHPFFWSSEMRLSFLRDTSDRVEVENRETSSDLLVTLESIATDALGGKWDERMEPAFIANIGHYRRYNFNSVRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFYEYFANRYPRLLIEVYKVILHYCKEEECFQRYFRCVD 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3407g00001 852 Pfam Ribonuclease 2-5A 722 848 IPR010513 GO:0004540|GO:0006397
Vium3407g00001 852 MobiDBLite consensus disorder prediction 366 403 - -
Vium3407g00001 852 CDD RNase_Ire1 720 848 - -
Vium3407g00001 852 Gene3D KEN domain 719 851 IPR038357 -
Vium3407g00001 852 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 48 187 IPR011047 -
Vium3407g00001 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Vium3407g00001 852 PANTHER IRE1-RELATED 138 850 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vium3407g00001 852 Gene3D Phosphorylase Kinase; domain 1 412 502 - -
Vium3407g00001 852 SUPERFAMILY Protein kinase-like (PK-like) 430 721 IPR011009 -
Vium3407g00001 852 Pfam Protein kinase domain 432 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3407g00001 852 Gene3D - 36 257 IPR015943 GO:0005515
Vium3407g00001 852 SMART PGNneu 781 835 - -
Vium3407g00001 852 ProSiteProfiles KEN domain profile. 719 850 IPR010513 GO:0004540|GO:0006397
Vium3407g00001 852 SMART serkin_6 430 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3407g00001 852 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 422 502 - -
Vium3407g00001 852 ProSiteProfiles Protein kinase domain profile. 430 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3407g00001 852 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 541 718 - -
Vium3407g00001 852 Gene3D Transferase(Phosphotransferase) domain 1 538 718 - -
Vium3407g00001 852 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 720 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3407g00001 Vium-Chr3407 21437 55949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3407g00001 456 715 MAP Kinase Kinase Kinase AT3G06030 27.547 3.07e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vium3407g00001 Pkinase 6.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3407g00001 K08852 - gmx:100788389 1348.18