Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3400g00001 ATGGCTAAGCTTTCCCCTCTTGAAGAGGCCCTTCTAAAAGGTGACTCCTGTACAAGCAGCAAGTCTGATCCCATTAAGACAAAAGGAAATGAAAATTTAAGCCGAAATTCAAATGCTGGATTTTTCAATATTCTCACTTTCTCGTGGATCAGTCCATTAATAACAGTAGGCAATGAGAGGACTTTAAACCATGAAGACATCCCACGTCTTGGTACTGATGACAGTGCCTACGGGATTTTTCAAACTTTTAGAAGCAAACTAGAGTCAGAGTGTGGTAGTGTTAGGAATGTGACAACTCTTAAGCTGGCCAAGGTTTTATTCTTGTCGACATGGCAAGGGATCTTCTTATCAGGTTTATTTGCATTCTTGTATACGTGTGCTTCTTATGTAGGACCCTTTCTTATTGATATCCTTGTTCAATACCTCAACGGAGAACACATGTTTAAAAATGAAGGATATGTTTTGACTGCGGCATTTATTGCTGCAAAGCTTTTGGAGAGTCTTGCAGACAGGCACTGCATGTTCAGGTTCCAGCAGGTTGGGGTTCAAATTCAATCAAAGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCATGTCAATCAATGGAGGTTCATAGCACAGGGGAAATCATCAACTTAATGACTGTTGATGCTTCAAGGATTGGAGAATTTTGTTGGTATATGCATCGACCCTGGATGTGTGTTTTGCAAGTTGCTCTGGCCTTGTTGATTCTCTATAGAAGTGTAGGGGTTGCTTCAATAGCTGCTCTTGCTGCCACTGTAATTGTAATGTTTTTAAACCATCCCGTGGCATCATTGCAAGAAAAGTTTCAAGGCAAGGTAATGGAGTCCAAAGATAATAGAATGAAGGCTACGTCTGAGATTCTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAAACAGAGGAGATATGGCTGAAGAAATTTCTAGCTGGCTCAGCAGTTGTTAGATTTGTTTTCCATAATGCCCCCACTTTTATCGCAGTGGTTACTTTTGGTACTTGTGTTCTTGTAGGCATCCCACTTGAATCAGGAAAGGTCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATGCCTATCTACGGTCTTCCTGACACGGTTACAATGATTGCACAAAGTAGGATTTCTCTTGAAAGGATTGCATCATTTCTTCGTTTAGAAGAGTTGCAGACTGATGTAGTAGAGAAGCTTCCTTGGGGTAGTTCTGATAAGGCAGTTGAATTAGTAGATGGAAATTTCTCATGGGATTTATCTTCCTCTAATCCAACATTGAAAAACATCAATCTCACAGTTTTTCATGGTACGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGAAAGTCTAGTTTACTTTCTTGCATTATAGGGGAAGTACCAAAGATATCTGGGAGTCTGAAAATATGTGGAACAAAGGCCTATGTTTCTCAATCACCATGGATACAGAGTGGCAAGATAGAAGAGAACATATTGTTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAGGGTGCTAGAAGCATGTTCCTTGAAAAAAGACCTTGAGGTTCTACCATTTGGAGATCAGACCATTGTTGGAGAGAAAGGGATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCGCGTGCTATATACCAAGATGCTGATATATATCTTTTTGATGATCCATTCAGTGCGGTGGATGCTCATACGGGATCTCATCTTTTTAAGGAGTGCTTGCTTGACCTTTTAAAATCCAAAACTGTGATATACGTAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTAATACTGGTCATGAGAGAAGGAAGAATAACTCAAAAGGGAAAATTCAATGACATTCTCAGGTCAGGGACTGATTTTATGGAACTTGTAGATGCACACAGAGCAGCTTTATCTTCATCAATTAAGTCCCTAGAGAGAAGACCAACATTTAAACAACAAAGTACCACCAAGGAGAACAAAAATTCATTAACTGATTTTGAATATGAGGAAAATGAGGAAAACATTCATGATAAGAAGGATAATAAAGATGACACAAATGAATCAAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAATGTATACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTAGCTCAGATACTCACCGTGGGTTTTCAAATTGCAAGCAATTACTGGATGACTGTGGCAACTCCTGTTTCAGGAACTGCTGAACCTGATATTGGAAGCCTTACACTTATGCTTGTCTATGTCGCATTGGCAATCGGAAGTTCAATTTTCACCCTTGCCAGAGCATTTATTGCTGTGATAGCTGGATATAAAACAGCCACTGTGCTCTTCAGTAAAATGCATTTCTGTGTTTTTCGAGCACCAATATCTTTTTTTGATGCCACCCCAAGTGGTCGAATCCTGAATAGAGCTTCAACAGACCAAAGTGAACTAGATATGAGCATTCCATCATTAGTATGGGCAATTACCCTAAATTTGATTCAAATCTTCGGAAATATTGTTATAATTTCTCAAGCGGTATGGCAGGTCTTTCTAGTATTGATTCCTGTAATGGCAGCATGCATATGGTACCAGCGATACTATTCTGCATCTGCAAGGGAACTGGCACGATTAGTTGGTACATGTCAAGCTCCAGTTATACAACATTTTTCAGAAACAATTTCAGGATCAACAACCATAAAATGTTTTGAACAAGAATCAAGATTTAATGACATAAATATGAAATTGATAGACAGATATTCCCAACCCAAACTATACAGTGCTACTGCAATTGAATGGCTGAATTTCCGATTGGATATTTTATCCACTCTCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAACTCATTTACTGCTCCAGGCATTGCTGGACTGGCTGTGACATATGGACTTAATCTAAACTCTCTACAAACTAATATAATCTGGTTTCTTTGCACTTTGGAGAACAAAATTATATCTGTTGAAAGAATACTTCAATACACATCTCTCCCAAGTGAAGCTCCTCTTGTGATTAAAGACAACCAGCCGGAATATTATTGGCCATCATTTGGTGAGGTTCATATCCGGGATCTACAGGTTCGATATGCTCCTCACTTGCCTATTGTTCTACGAGGCCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTAGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAAACACTTTTCCGACTTGTTGAACCTGTTGCGGGACAAATATTGATAGATAGCATTAACATCACTTCGATTGGAATTCATGATTTGAGGTCCAGACTAAGCATTATTCCTCAAGAGCCAACAATGTTTGCAGGGACTGTAAGAAGCAACCTGGATCCACTGGAAGAGTACACAGATGAACAGATTTGGCAGGCTTTAGAGATGTGCCAACTTGGAGATGATGTAAGGAAAAAAGAAGGGAAACTTGACTCCACAGTTACTGAAAATGGAGAAAATTGGAGCATGGGTCAAAGGCAATTGGTCTGCCTTGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCTGTTGACACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCATCATTTTGCAGAATGCACAGTCCTCACCATTGCTCATAGGATAACTTCAATCATTGACAGTGACATGGTTCTGTTTTTAAATCAAGGGTTGATTGAAGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCATCTCTAGCTCTACTGGTTGCTGAATACACAAGGAGATCAGACTCTGGTTTTGGAAATTAA 3921 0.393 MAKLSPLEEALLKGDSCTSSKSDPIKTKGNENLSRNSNAGFFNILTFSWISPLITVGNERTLNHEDIPRLGTDDSAYGIFQTFRSKLESECGSVRNVTTLKLAKVLFLSTWQGIFLSGLFAFLYTCASYVGPFLIDILVQYLNGEHMFKNEGYVLTAAFIAAKLLESLADRHCMFRFQQVGVQIQSKLVAMIYAKGLTLSCQSMEVHSTGEIINLMTVDASRIGEFCWYMHRPWMCVLQVALALLILYRSVGVASIAALAATVIVMFLNHPVASLQEKFQGKVMESKDNRMKATSEILKNMRILKLQAWEMKFLSKIIQLRKTEEIWLKKFLAGSAVVRFVFHNAPTFIAVVTFGTCVLVGIPLESGKVLSALATFRILQMPIYGLPDTVTMIAQSRISLERIASFLRLEELQTDVVEKLPWGSSDKAVELVDGNFSWDLSSSNPTLKNINLTVFHGTRVAVCGTVGSGKSSLLSCIIGEVPKISGSLKICGTKAYVSQSPWIQSGKIEENILFGKEMDREKYERVLEACSLKKDLEVLPFGDQTIVGEKGINLSGGQKQRVQIARAIYQDADIYLFDDPFSAVDAHTGSHLFKECLLDLLKSKTVIYVTHQVEFLPDADLILVMREGRITQKGKFNDILRSGTDFMELVDAHRAALSSSIKSLERRPTFKQQSTTKENKNSLTDFEYEENEENIHDKKDNKDDTNESKGQLVQEEEREKGRVGFNVYWKYITTAYGGALVPFILLAQILTVGFQIASNYWMTVATPVSGTAEPDIGSLTLMLVYVALAIGSSIFTLARAFIAVIAGYKTATVLFSKMHFCVFRAPISFFDATPSGRILNRASTDQSELDMSIPSLVWAITLNLIQIFGNIVIISQAVWQVFLVLIPVMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIKCFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDILSTLTFAFCLVFLISFPNSFTAPGIAGLAVTYGLNLNSLQTNIIWFLCTLENKIISVERILQYTSLPSEAPLVIKDNQPEYYWPSFGEVHIRDLQVRYAPHLPIVLRGLTCTFTAGSKTGIVGRTGSGKTTLVQTLFRLVEPVAGQILIDSINITSIGIHDLRSRLSIIPQEPTMFAGTVRSNLDPLEEYTDEQIWQALEMCQLGDDVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKHHFAECTVLTIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLALLVAEYTRRSDSGFGN 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3400g00001 1306 SUPERFAMILY ABC transporter transmembrane region 111 411 IPR036640 GO:0005524|GO:0016020
Vium3400g00001 1306 Pfam ABC transporter transmembrane region 114 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3400g00001 1306 Pfam ABC transporter transmembrane region 743 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3400g00001 1306 CDD ABCC_MRP_domain1 429 629 - -
Vium3400g00001 1306 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Vium3400g00001 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1060 1294 IPR003439 GO:0005524
Vium3400g00001 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Vium3400g00001 1306 Pfam ABC transporter 1078 1225 IPR003439 GO:0005524
Vium3400g00001 1306 FunFam ABC transporter C family member 3 1043 1295 - -
Vium3400g00001 1306 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
Vium3400g00001 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3400g00001 1306 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Vium3400g00001 1306 CDD ABC_6TM_ABCC_D2 741 1035 IPR044726 GO:0140359
Vium3400g00001 1306 MobiDBLite consensus disorder prediction 667 717 - -
Vium3400g00001 1306 Coils Coil 688 708 - -
Vium3400g00001 1306 FunFam ABC transporter C family member 5 704 1041 - -
Vium3400g00001 1306 SMART AAA_5 456 629 IPR003593 GO:0016887
Vium3400g00001 1306 SMART AAA_5 1086 1271 IPR003593 GO:0016887
Vium3400g00001 1306 SUPERFAMILY ABC transporter transmembrane region 741 1042 IPR036640 GO:0005524|GO:0016020
Vium3400g00001 1306 Gene3D ABC transporter type 1, transmembrane domain 89 410 IPR036640 GO:0005524|GO:0016020
Vium3400g00001 1306 Gene3D ABC transporter type 1, transmembrane domain 703 1041 IPR036640 GO:0005524|GO:0016020
Vium3400g00001 1306 Gene3D - 411 677 IPR027417 -
Vium3400g00001 1306 FunFam ABC transporter C family member 5 414 661 - -
Vium3400g00001 1306 MobiDBLite consensus disorder prediction 667 681 - -
Vium3400g00001 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Vium3400g00001 1306 Gene3D - 1043 1294 IPR027417 -
Vium3400g00001 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 743 1023 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3400g00001 1306 CDD ABCC_MRP_domain2 1058 1278 - -
Vium3400g00001 1306 MobiDBLite consensus disorder prediction 682 717 - -
Vium3400g00001 1306 FunFam ABC transporter C family member 10 98 411 - -
Vium3400g00001 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1286 IPR027417 -
Vium3400g00001 1306 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 37 1293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3400g00001 Vium-Chr3400 19911 25557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3400g00001 429 676 Calmodulin-binding Proteins AT2G36910 30.597 2.90e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3400g00001 - K05666 gmx:106794105 2201.02