Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3397g00017 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGAATTCCGTGGGATGTTGATACTGAAGGATTAAGGGAATATATGAGCAAATTTGGCGAGCTGGAAGATTGCATTGTAATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGTGAACACATTCTTGGTAATAGGACACTGGAAGTCAAAGTGGCTACACCGAAGGAGGAAATGAGGGCACCAGTCAAAAAGGTTACTAGAATATTTGTAGCCAGGATCCCACAATCGGTAACAGAAGCTGCTTTCCGAAGTCATTTTGAGAAGTATGGTGATATAACAGATCTGTACATGCCTAAGGATCAAGGCTCCAAAACACATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCGGTGGTGGTTGATCGAGCAACACCTAAGGATGAAGACTTTAAGCCAATTGGCAGCAGAATGCCACCACAGGGAGGATATGGTGCATACAATGCTTACATTTCTGCAGCCACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGATCATCCTGGCCCAATTTATGGACGGGGAGAACCTGCTCGTAGAACTAGTAAAAAGATTTTTGTTGGCCGTCTACCCCCAGAAGCATCTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAACAGGCCACAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGTCTCATGAGATTTGTGGACATCAGGTTGCAATAGATTCGGCTACACCCGTTGATGATGCAGGGCCCAGTGGGAATTTCATGATGGAATCTTTTGGGGGATATGGCGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTAGACTTTGACGATTGGGGTTATGGAATTGGGAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1071 0.4444 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEAAFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDEDFKPIGSRMPPQGGYGAYNAYISAATRYAALGTPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEASSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3397g00017 356 Gene3D - 88 175 IPR012677 -
Vium3397g00017 356 Gene3D - 1 87 IPR012677 -
Vium3397g00017 356 Gene3D - 221 306 IPR012677 -
Vium3397g00017 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Vium3397g00017 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Vium3397g00017 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Vium3397g00017 356 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 224 313 - -
Vium3397g00017 356 FunFam RNA-binding family protein isoform 1 223 306 - -
Vium3397g00017 356 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vium3397g00017 356 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Vium3397g00017 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Vium3397g00017 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vium3397g00017 356 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Vium3397g00017 356 SUPERFAMILY RNA-binding domain, RBD 88 189 IPR035979 GO:0003676
Vium3397g00017 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Vium3397g00017 356 SUPERFAMILY RNA-binding domain, RBD 222 325 IPR035979 GO:0003676
Vium3397g00017 356 SMART rrm1_1 93 164 IPR000504 GO:0003723
Vium3397g00017 356 SMART rrm1_1 227 298 IPR000504 GO:0003723
Vium3397g00017 356 SMART rrm1_1 5 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3397g00017 Vium-Chr3397 116367 120576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3397g00017 17 274 Eukaryotic Initiation Factors Gene Family AT2G36660 24.427 9.37e-14 70.5