LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3397g00006	ATGTCGCAACGATCTGTGCCGGCACCGTTTTTGACGAAGACGTATGAGTTGGTGGATGATCCAGGGACGAACGAGGTGATATCGTGGAGTGACAGTGGGAACACATTTGTTGTGTGGAAACATGCGGAATTTGCCAAGGATTTGCTTCCTAAATGTTTCAAGCACAATAACTTCTCCAGTTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATTGTGCCAGATAAATGGGAATTCGCAAACGAACATTTCAAGCGAGGGCACAAGGAGCTTCTCTGCGACATTAAACGCCGCAAGACCGTGCCGCAATTGCATGCGCTTCCACCGGAGGCCGGAAAATCCAGCGGGGGTGGTAACTCTCCGTTAAACTCCGGCGGTGGAGATGACGCTGGGTCCACCTCTACCTCGTCATCCTCCTCCGGTTCGAAGAACACGGGGTTGGTGGAAACAAACACAACAGCTTCTCATGAGTTATCGAGCGAGAACCAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTTGCTTTTCTCAAGAACCGTCTGATGGTGGGTCCTGATCAGATAGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAGAAGGCGGTAGGTGAAGAAGGTGGTGGGGAGTGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAGGATACACTAGCAGACAAAAGAAACAACAACCACAAGAGAGCGCGCGAAGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAGGAGTCCAAGCCCGTTGTTGACTTTGAACCTATAAATCTCATCATGACTAGCAATAAGGTTTGCAACTGA	855	0.5041	MSQRSVPAPFLTKTYELVDDPGTNEVISWSDSGNTFVVWKHAEFAKDLLPKCFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGHKELLCDIKRRKTVPQLHALPPEAGKSSGGGNSPLNSGGGDDAGSTSTSSSSSGSKNTGLVETNTTASHELSSENQKLKKDNETLSCELARARKQCDELVAFLKNRLMVGPDQIDRIMRQGSCGSEKAVGEEGGGECLKLFGVWLKEDTLADKRNNNHKRAREDQMGFGGPRLKESKPVVDFEPINLIMTSNKVCN	284

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3397g00006	284	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3397g00006	284	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3397g00006	284	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3397g00006	284	MobiDBLite	consensus disorder prediction	117	160	-	-
	Vium3397g00006	284	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3397g00006	284	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Vium3397g00006	284	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3397g00006	284	Coils	Coil	156	183	-	-
	Vium3397g00006	284	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3397g00006	284	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Vium3397g00006	284	Gene3D	-	2	101	IPR036388	-
	Vium3397g00006	284	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	209	IPR027725	-
	Vium3397g00006	284	MobiDBLite	consensus disorder prediction	106	168	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3397g00006	Vium-Chr3397	28033	30070	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3397g00006	2	284	HSF	AT4G36990	51.342	1.51e-79	240

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vium3397g00006		HSF_DNA-bind	5.9e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3397g00006	K09419		-	gmx:100791543	457.988