Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3392g00015 ATGGAACTTAGTTTTAACCACCAACTTTGCCTTCTTTCTGTCATACTCTTTCTACCTGCACTGTGTTTATCACAGGACACTTTTACATGCTCCAGAGCAACATACTATGGCAGCCCTGATTGCTATGGGAATCCAAAGGGAGCTTGTGGCTTTGGCGAATATGGAAGAACGGTGAATGATGGAAGTGTGGCAGGAGTGTCAAGGCTATGGAGGAACGGGAGCGGTTGTGGAGCATGCTATCAGGCTAGGTGCAAGATACCACAGTATTGCGATGAAAACGGAGCATTCGTGGTGGCAACAGATTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCACGCGCCTTCTCGAGATTGGGACGCAACGCAGATGCATCTGCAGAGTTGTTCAAATATGGTGTAGTGGATATTGAATACAGAAGGGTCCCGTGCAGTTATTCTGGCTACAATGTCGTGTTTAAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATGTAGACGGAACATACGATGTCACTGCTGTTGAGTTGTTTCAGCAAGACTGCCAAGAATGGAAGCCATTGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAACCCTCCAAGTGGTGAAATCTATTTGAGATTCTAG 654 0.4709 MELSFNHQLCLLSVILFLPALCLSQDTFTCSRATYYGSPDCYGNPKGACGFGEYGRTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAFVVATDYGEGDRTDFIMSPRAFSRLGRNADASAELFKYGVVDIEYRRVPCSYSGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQQDCQEWKPLRRAFGAMFDYSNPPSGEIYLRF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3392g00015 217 Gene3D - 21 145 IPR036908 -
Vium3392g00015 217 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Vium3392g00015 217 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 217 IPR007117 -
Vium3392g00015 217 Gene3D - 146 217 IPR036749 -
Vium3392g00015 217 PANTHER EXPANSIN-B3 16 217 - -
Vium3392g00015 217 Pfam Lytic transglycolase 63 140 IPR009009 -
Vium3392g00015 217 CDD DPBB_EXLB_N 31 145 - -
Vium3392g00015 217 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vium3392g00015 217 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Vium3392g00015 217 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vium3392g00015 217 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Vium3392g00015 217 Pfam Expansin C-terminal domain 152 217 IPR007117 -
Vium3392g00015 217 SUPERFAMILY PHL pollen allergen 151 216 IPR036749 -
Vium3392g00015 217 SUPERFAMILY Barwin-like endoglucanases 16 149 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3392g00015 Vium-Chr3392 186598 188200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3392g00015 3 217 Expansin Gene Family AT4G17030 58.257 8.85e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3392g00015 - - gmx:100779487 432.565