Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3392g00014 ATGGAGCTTAGCTTTAAGCACCAAATTGGCCTTGTTTGTATCATACTGCTCTTTCCTGCACTGTGTTACGGCCAGGAATATACTAAATCGAGAGCAACCTTTTACAGTACTTCTGATGGTTATGGGACTCCAACGGGAGCTTGTGGATTTGGCGAATATGGAAGGAAGATGAATTGGTACGATGGAAGTGTGGCAGGAGTCTCTGGGCTGTGGAGGAATGGAGTTGGCTGTGGGACATGCTATCAGGTAAAGTGCCTTATAGAAAACCTATGCGATGAGAATGGAGCATACCTGGTGGCAACAGACCAGGGTTACGGAGACAACACAGACTTCGTGATGAGCCCACGCGCCTTCACACAACTGGGACGTGATGAGAAGGCTTACGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAGAAGGGTTCCATGTTCCTACACCGGCAACGTGGTGTTCTATATCAAGGAAACTAGCAGCAACCCTGGTTACTTTGCTGTGGTCATTCTTAATGTCAACGGAATAAACGATGTGACTGCGGTTGAAATGTGGCAGTCTGGAGAATGGAAGGCACTTAACAGGAACTATGGAGCAGTGTTTGACTTTGCTAACCCTCCGAGTGGCGAGATCAGGTTGAGGTTTAAGGTGAGTGGCATGTCTGATTGGGTGGACCCCAAGATTGTCATTCCTAGTTACTGGCAGCCTGGAAGCACTTATGTCACCGAGGTTCAGCTTAAATAG 744 0.4718 MELSFKHQIGLVCIILLFPALCYGQEYTKSRATFYSTSDGYGTPTGACGFGEYGRKMNWYDGSVAGVSGLWRNGVGCGTCYQVKCLIENLCDENGAYLVATDQGYGDNTDFVMSPRAFTQLGRDEKAYEELKKYGTVDIEYRRVPCSYTGNVVFYIKETSSNPGYFAVVILNVNGINDVTAVEMWQSGEWKALNRNYGAVFDFANPPSGEIRLRFKVSGMSDWVDPKIVIPSYWQPGSTYVTEVQLK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3392g00014 247 SUPERFAMILY PHL pollen allergen 151 241 IPR036749 -
Vium3392g00014 247 Pfam Lytic transglycolase 64 140 IPR009009 -
Vium3392g00014 247 SUPERFAMILY Barwin-like endoglucanases 13 151 IPR036908 -
Vium3392g00014 247 Gene3D - 19 146 IPR036908 -
Vium3392g00014 247 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vium3392g00014 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Vium3392g00014 247 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Vium3392g00014 247 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Vium3392g00014 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Vium3392g00014 247 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Vium3392g00014 247 PANTHER EXPANSIN-B3 17 245 - -
Vium3392g00014 247 Pfam Expansin C-terminal domain 152 231 IPR007117 -
Vium3392g00014 247 Gene3D - 147 242 IPR036749 -
Vium3392g00014 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 242 IPR007117 -
Vium3392g00014 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3392g00014 Vium-Chr3392 170361 172108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3392g00014 1 246 Expansin Gene Family AT4G17030 44.444 5.79e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3392g00014 - - gmx:100777265 454.136