Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3392g00013 ATGGAACTCGGTTTTAAGCACCAAGTCGGTGTGGTGTGTGCGATATTGCTTCTCCCTGCACTGTGTAGCTGCTACGAATATGCAACGAACTCCAGAGCAAGCTATTACAGTAGCCCTGGTGGCTATGGGAATCCCAGGGGAGCTTGTGGATACGGAGAATATGGAATGACGATGAACAATGGCAATGTTGTAGCCGTATCAGGAGGACTATGGCGGAATGGAGCTGGTTGTGGTGCATGCTACAAGGTATGGTGCAAAAGGGCAGAATACTGCAACGCGAAAGGAGTGTACGTGGTGGCAACAGACTATGGCGAGGGAGACAGAACAGAGTTCATAATGAGCAAACGCGGGTTCTCAGAATTGGGAAAGAACGCAGCTGCTTCTGCGAAACTGTTGAAGGAAGGGGTAGTGAATATTTCATTCAAAAGGGTTCCCTGCACATTCCCTTCTAACATCAAGCTCCACGTCCACGAAAGCAGCAAAAACCCCTCCTACTTTGCTCTTGTGCTTCTCAACGTAAATGGAATGAGTGACATCACTGCTGTAGAGATATGGCACAGAGAGCAGAAACGATGGGAGCCACTCCGCAGGGCCTATGGGGCTGTCTTTGACTTTGCTAACCCACCCACCGGTCAAATCCGTCTCAGGTTTCAACTTGGCTATAAATATTGGCTCCTTCCCAAGATCCCTATTCCTGCTAACTGGAAGTCTGGTGCTACTTATGACTCCCAACTTGAGCCTTATTAA 747 0.4873 MELGFKHQVGVVCAILLLPALCSCYEYATNSRASYYSSPGGYGNPRGACGYGEYGMTMNNGNVVAVSGGLWRNGAGCGACYKVWCKRAEYCNAKGVYVVATDYGEGDRTEFIMSKRGFSELGKNAAASAKLLKEGVVNISFKRVPCTFPSNIKLHVHESSKNPSYFALVLLNVNGMSDITAVEIWHREQKRWEPLRRAYGAVFDFANPPTGQIRLRFQLGYKYWLLPKIPIPANWKSGATYDSQLEPY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3392g00013 248 Gene3D - 21 146 IPR036908 -
Vium3392g00013 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Vium3392g00013 248 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vium3392g00013 248 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Vium3392g00013 248 Gene3D - 147 244 IPR036749 -
Vium3392g00013 248 Pfam Lytic transglycolase 65 140 IPR009009 -
Vium3392g00013 248 SUPERFAMILY Barwin-like endoglucanases 14 150 IPR036908 -
Vium3392g00013 248 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Vium3392g00013 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Vium3392g00013 248 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vium3392g00013 248 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Vium3392g00013 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Vium3392g00013 248 PANTHER EXPANSIN-B3 17 245 - -
Vium3392g00013 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Vium3392g00013 248 Pfam Expansin C-terminal domain 152 225 IPR007117 -
Vium3392g00013 248 SMART dpbb_1 63 141 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3392g00013 Vium-Chr3392 161861 162827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3392g00013 12 245 Expansin Gene Family AT4G17030 47.059 7.14e-74 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3392g00013 - - gmx:100776296 365.54