Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3392g00012 ATGGAACTCGGTTTTAGGCACCAACTTGGCCTTGTTTGTGTCATATTCCTCTTCCCTGCACTCTGCAACTGCAAGGAATATTTCACCAACTCAAGAGCAACCTATTATGGCAGCCCCGACGGCTACGGTACTCCAACCGGAGCATGTGGATTCGGGGAGTATGGAAGGAAGATGAATCGGTACGATGGAAGAGTGGCAGGGGTCTCTGGGCTATGGAGGAATGGAGCTGGTTGTGGCACGTGTTATCAGGTAAAGTGCAAAATACCAGAACTGTGCGATGTGAATGGAGCATTCCTGGTGGCAACAGACCAGGGTTACGGAGACAGAACGGACTTCGTAATGAGCCCACGGGCGTTCTCAAGATTGGGACGCAATCAAAATGCATCTGCAGAGCTAAAGAAATACGGTACAGTGGACATTGCATACAGAAGAGTTCCATGTACGTTCATGGGCAACGTCTTGTTTCACATAAAGGAAAGTAGCAGCAACCCTGGTTACTTGGCCGTTCTGATTCTGAATGTAAATGGAAAATACGACGTCAATGCTGTTGAAATGTGGCAGAAAGGGCAACAACGATGGGAACCCCTTCGAAGAGTGTATGGGGCAGTGTTTGACTTTGCGAATCCACCCAGAGGTGCAATCCTGCTGAGATTTCAAGTTGGCGTTAATTGGATGACACCAAACATCCCTATCCCTTCTAATTGGAAGCCTGGAGCTACTTATGACACCAAACTTCAGCTTTAA 744 0.4785 MELGFRHQLGLVCVIFLFPALCNCKEYFTNSRATYYGSPDGYGTPTGACGFGEYGRKMNRYDGRVAGVSGLWRNGAGCGTCYQVKCKIPELCDVNGAFLVATDQGYGDRTDFVMSPRAFSRLGRNQNASAELKKYGTVDIAYRRVPCTFMGNVLFHIKESSSNPGYLAVLILNVNGKYDVNAVEMWQKGQQRWEPLRRVYGAVFDFANPPRGAILLRFQVGVNWMTPNIPIPSNWKPGATYDTKLQL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3392g00012 247 SUPERFAMILY PHL pollen allergen 152 242 IPR036749 -
Vium3392g00012 247 Pfam Lytic transglycolase 65 134 IPR009009 -
Vium3392g00012 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 152 IPR007112 -
Vium3392g00012 247 Gene3D - 150 247 IPR036749 -
Vium3392g00012 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Vium3392g00012 247 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vium3392g00012 247 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Vium3392g00012 247 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Vium3392g00012 247 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vium3392g00012 247 CDD DPBB_EXLB_N 29 147 - -
Vium3392g00012 247 Gene3D - 20 148 IPR036908 -
Vium3392g00012 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 243 IPR007117 -
Vium3392g00012 247 Pfam Expansin C-terminal domain 154 224 IPR007117 -
Vium3392g00012 247 PANTHER EXPANSIN-B3 18 246 - -
Vium3392g00012 247 SUPERFAMILY Barwin-like endoglucanases 14 152 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3392g00012 Vium-Chr3392 159203 160362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3392g00012 9 247 Expansin Gene Family AT4G17030 49.796 1.77e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3392g00012 - - gmx:100778424 426.017