Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3392g00011 AACTCTTCTGGGTGTATTGGCTTCTTACTGGCTGCCTTTGTACATATTTTCTTCTGGTTTCTGAGTTTTTCTACATATTTTCCCCTTTACTTGAGGAAAAGTTTGGACTTGGGAAGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGACCACCTGAGAAGCCTGTACTATGCAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTTGCAAATTATACCCCTTTGCATGCACGGGCAGAAAATGCTGATTATGAGGATCAAAAAGTTTCCAGGGTAAAAAGCATATCACTAAATAAGAACAAAGAAGTGAAATTGGTCAAGAGAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTCGTTCCAGATTATAATCAAGGACACCTAAAGGTTGTGGATGAAGATACAAGCAACAGATCAAGCTCAGGGTCAGCTATTTCTAACTCGGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCAATGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGAACATGTTCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACAAGAGACCTGTGTACTATTCTTCATGAACAACAGTCTTGTTTCTCTGTATCTTCTGAAGAGGATCTTCTTTTGGAAAGTGACACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCCGAGGCCAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAAGCATATTCATTCTCTAGTACGATTCCTTTGTATAGTAGTGATCACAGTGGCATGAACTTTTCATCTCAAGGAATTGAAAAGATAGAAAACTCAGCTGGCCAAATCATGCAACAAGAGAAACTTGAAAGGGACAAGTCTCAGCTTGAAAAACAAGTTCCTGGAAATCACAATTCACTGTTGTGCTCAATAGATTTAAATGATGTGGTGAACTATGAGGAGTTTATGAGGAACTTGACAAATGAAGAGCAGCAGCAATTACTAAAGTATCTTCCTGTGGTTGATACTTCTAATTTTATTGATAGCCTTAAAAACATGTTCAGTAGCTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGACATCTCTTTGTTGGGGACAAAACCTGAAGAATGGAAGACATTGAAAAGGCTTGTGTTATCTAATATGTCAAAATCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAAACTAATGGTCCAGGATCTACTGCTATGGAATCAAGTAATATTACAAATGCCAAGAGAATACGTGAGCATGACAGCCAAAATCAAAATTTTGCAGAATTGAAGACAACAATGAGGAGCCCCATAAGGGTGATTATAAATCCTGTATGTGAAGGCAAAGAAGTTGTAGAAGAAGGCTCAAGCTTCAGCCCAGAAAGCCTTTTTTCTTTGCCACATGGTGTTGGTGGCTTGCACATGTTGGATTCTTTTAACTATGTTGGAGAGAGTTCTGAGGATCTGCTGTTAGATGTGCCTTCTAACAGTTCTTTTCCGCAGGCAGAGCTCCTGCTCCCAACTTTAAGCTATGATGCTAAGGTCTGCACCACTAGTAGCTCAGTACACTCAACTGTTACTCATCATCCTTAA 1743 0.4062 NSSGCIGFLLAAFVHIFFWFLSFSTYFPLYLRKSLDLGSKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENADYEDQKVSRVKSISLNKNKEVKLVKRKQNYDNAASGGFVPDYNQGHLKVVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAMSVVWDAMVPSKKRTCSGRPKPSSVEKLTRDLCTILHEQQSCFSVSSEEDLLLESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPLYSSDHSGMNFSSQGIEKIENSAGQIMQQEKLERDKSQLEKQVPGNHNSLLCSIDLNDVVNYEEFMRNLTNEEQQQLLKYLPVVDTSNFIDSLKNMFSSFQFKENLTYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNMSKSKWVEHYNFLKKCENKAGKTNGPGSTAMESSNITNAKRIREHDSQNQNFAELKTTMRSPIRVIINPVCEGKEVVEEGSSFSPESLFSLPHGVGGLHMLDSFNYVGESSEDLLLDVPSNSSFPQAELLLPTLSYDAKVCTTSSSVHSTVTHHP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3392g00011 580 CDD ZnF_GATA 43 91 IPR000679 GO:0006355|GO:0043565
Vium3392g00011 580 Pfam Asx homology domain 318 412 IPR028020 -
Vium3392g00011 580 Pfam GATA zinc finger 44 78 IPR000679 GO:0006355|GO:0043565
Vium3392g00011 580 Gene3D - 40 123 IPR013088 GO:0006355|GO:0008270
Vium3392g00011 580 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 332 444 IPR044867 -
Vium3392g00011 580 ProSiteProfiles GATA-type zinc finger domain profile. 44 77 IPR000679 GO:0006355|GO:0043565
Vium3392g00011 580 ProSitePatterns GATA-type zinc finger domain. 44 69 IPR000679 GO:0006355|GO:0043565
Vium3392g00011 580 Gene3D - 322 427 IPR038108 -
Vium3392g00011 580 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 40 83 - -
Vium3392g00011 580 PANTHER OSJNBB0038F03.10 PROTEIN 44 567 IPR044589 -
Vium3392g00011 580 SMART GATA_3 38 90 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3392g00011 Vium-Chr3392 145082 150656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3392g00011 40 555 C2C2-Gata Transcription Factor Family AT4G17570 51.210 2.72e-147 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium3392g00011 ASXH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3392g00011 - - vum:124834311 1114.37