Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3392g00001 ATGGGAACGCTTAAGCCAATCTTTGGAAAAGGTGGAAACAGAACATCAGGCACTCCAAGAGCAGTGAAGAATAAAATGGCAAAGACAAACGTGGAGTCAATTACTAGATGCAAAAGGGTTTGTGAACGAGGTGTAATAGAAAAAGGTCCATCATCACCTGAAGGAAAAGCTACAGACAAGAAAAGAGAGTCACCTTTTCCTGAAAGAGCAAGTTCATCTAAACGAGGTGCTAGAAGAGGCATGCAGGGTACACTGAACCAACCTACTCAGAAGAGGGCAAGAATACAAGAAAAAAACAACGAAATTTGTGATCCTGGACCAAGATCAATAATGGAAGAAGGTCCATCATCATCGCCCGAAAGACAAGCAACAAACAACAAAAGAGGTTCACTTTGGCTTGAAAGAGTTAGGTCATGTACACGAGGCACAAAAAGGGGCATGCAGGATACGTCAAGCCAACCTACTCAGAAGAGGGTGAGAATAGTAGAACAAAACAAAGAAGTTAATAATCCTGGACCAAGCTCAATAATGGAAAAGAGTCCGTCATCACTTGAAAGACAAGCAGCAAACAAGAAAAGAGGTTCACCTTCATCTGATAGAGTACGGTCATGTAAGAAAACAACGTTTTTATGGTTGATAGACTCTAAGATTATTAAGGAAGATGAACGAGTAAGCTATAGGAGTGACACAATTGAAAAGCCATTAGCAGGAAGGATTACTAGGGGTGGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCAATGTGGACCTTTGAGAACCATGCTGGAAGTACTCTTAGACAGCCCTATAAACATATTTACATTCACAGAAAACGCAAAACCCTCCGAAAATGCTTGATTGATGTTTGGCAACATGCCCGGGAACAAAAGCGTCGGCAAATGTTTTTGTTTGTGCCAAAAGAAACTGATACAGACCAAGATGATGATGTTTGTGCAGTCTGTGGTGATGGGGGAGACTTAATCTGTTGTGACAGGTGTCCTTCCACATATCATCTATCTTGCATAAATATAGAGACGGTTCCCCAAAATGATTGGTTTTGTCCATATTGTGTATGCAAATACTGTGGGCTGGTTGTGGACCTAGTTGTTGAGAAAAAAAGATACTATGAGAAAAAAGAAGGCTTCAAGTGCTCCCAATGTGACAAGAAGTATCATTGGGAGTGCTTTGAAAAATATGAAAAAGATTCCTCAAAACTAACCAAACCTTCAAGATCATATTGTGGGCGAGGTTGCCAAGGGATATATGCAAAAATGGGAGTATATCTCGGAATCAGAAATGATTATTCGGCAAAATACTCTTGGAGGGTTATCCGCCTAATGGAGACATACAAGAACAATCCTGCATATATGAATCTATTCTTAGAAAACAATTCAAAGGTTGCAGTTACTTGGATGTTAATGAATGAAGCTTTTGAGAAAATAACTGACAGGAAAACAGGCATCAATGTGGTTCGAAGTATTGTTTACAGCTGCAAGTCAAACTTATCCAGGATTGATTTTAGCCGTTTTTATATGTTTGTTCTGGAGGAAGATGATGCGATAATTGCTGCAGCTTCTATAAGATTTCACGGGTCAGGGATTGCAGAAATGCCACTTATTGCAACAGAAATGACACGCAGGGGCCAAGGAGTTTGCCAGGAATTAATGAGGGTAATTGAATCGTTCCTATGCAATCTTAAAGTCAAAAACTTGATAATTCCATCTGCTGTGGAGACTTGTGATATGTGGAAGCGCAAGTACAACTTTACTGAGGTGAGTGAAGAGCTGAAGAAAGAAATATCCTCCTATAAAATTGTAATGTTCCCTTGTGCTGTAAGACTGTACAAGGACTTGTCAGCAAGCATAGCAGAAATTAAGATTGACCTGGAACCACAAACAGAGCATGCAGAGGTTACTGCTAGACTTGAGCATGGACCCTCTCACCAGGAAGATTAG 1956 0.4044 MGTLKPIFGKGGNRTSGTPRAVKNKMAKTNVESITRCKRVCERGVIEKGPSSPEGKATDKKRESPFPERASSSKRGARRGMQGTLNQPTQKRARIQEKNNEICDPGPRSIMEEGPSSSPERQATNNKRGSLWLERVRSCTRGTKRGMQDTSSQPTQKRVRIVEQNKEVNNPGPSSIMEKSPSSLERQAANKKRGSPSSDRVRSCKKTTFLWLIDSKIIKEDERVSYRSDTIEKPLAGRITRGGILCSCCQEEISMWTFENHAGSTLRQPYKHIYIHRKRKTLRKCLIDVWQHAREQKRRQMFLFVPKETDTDQDDDVCAVCGDGGDLICCDRCPSTYHLSCINIETVPQNDWFCPYCVCKYCGLVVDLVVEKKRYYEKKEGFKCSQCDKKYHWECFEKYEKDSSKLTKPSRSYCGRGCQGIYAKMGVYLGIRNDYSAKYSWRVIRLMETYKNNPAYMNLFLENNSKVAVTWMLMNEAFEKITDRKTGINVVRSIVYSCKSNLSRIDFSRFYMFVLEEDDAIIAAASIRFHGSGIAEMPLIATEMTRRGQGVCQELMRVIESFLCNLKVKNLIIPSAVETCDMWKRKYNFTEVSEELKKEISSYKIVMFPCAVRLYKDLSASIAEIKIDLEPQTEHAEVTARLEHGPSHQED 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3392g00001 651 MobiDBLite consensus disorder prediction 77 93 - -
Vium3392g00001 651 MobiDBLite consensus disorder prediction 17 31 - -
Vium3392g00001 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 381 IPR013083 -
Vium3392g00001 651 MobiDBLite consensus disorder prediction 167 191 - -
Vium3392g00001 651 SUPERFAMILY FYVE/PHD zinc finger 290 360 IPR011011 -
Vium3392g00001 651 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 504 582 IPR016181 -
Vium3392g00001 651 ProSiteProfiles Zinc finger PHD-type profile. 315 360 IPR019787 -
Vium3392g00001 651 SMART PHD_3 359 419 IPR001965 -
Vium3392g00001 651 SMART PHD_3 317 358 IPR001965 -
Vium3392g00001 651 MobiDBLite consensus disorder prediction 1 201 - -
Vium3392g00001 651 CDD PHD2_CHD_II 317 357 - -
Vium3392g00001 651 PANTHER PHD FINGER PROTEIN 12 130 623 IPR042163 GO:0003714|GO:0045892
Vium3392g00001 651 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 472 619 IPR000182 GO:0016747
Vium3392g00001 651 Pfam Tify domain binding domain 237 287 IPR032308 -
Vium3392g00001 651 Gene3D - 489 607 - -
Vium3392g00001 651 MobiDBLite consensus disorder prediction 53 75 - -
Vium3392g00001 651 MobiDBLite consensus disorder prediction 143 159 - -
Vium3392g00001 651 Pfam PHD-finger 317 359 IPR019787 -
Vium3392g00001 651 CDD NAT_SF 512 573 - -
Vium3392g00001 651 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3392g00001 Vium-Chr3392 7 3505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3392g00001 205 620 PHD Transcription Factor Family AT4G14920 39.141 1.30e-100 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium3392g00001 TDBD 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3392g00001 - - vum:124834316 1313.9