Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3387g00005 ATGCAAACCTTGCTCTCTTTCTTGAGAAAGACTACGATGGCCATGCTCAACCAAATACTGAGATCGCTGAAGAAACCAAAGGTACTGAGACTTGTATGTCTTGCTTCATCTGTTGTTGGATTGCTCTGTTATGCACTCAGTTCCTCTTTCAACCATTTACTGGGAAACTGGAGCTGGTGGAAGATGCTTCTTTATATTGTTTTCAGTTTCATCGTTTTCCTTGCCGTCTTGTTCGCACCGGCAAGGTCGCGCTCCACCTCTCTCCGGCTGGAATCTCATGTGTCATTTTTGGTTCTCATAATCACTTCTGTTTATTCCTTTTTGTTTGATAATCTCGTGAAGGGTAAACCAGATGCATACAGCCTGGTCTCTTGTGCTGCTTTTGCTACCATGTCACTTGGCTTGTCAAATCTTACTCAATTTGGATTCCAGATCGATCTACTATATTTCTTCTGCGGAGGTCTACTAGTACAACTCATGGAGATCAAAATGTGGTTAGTCATTGTTGGAGGGAGCTTCAGTTATTCCCTCATTCAAATTTGTGATTATCCGCGCCACACACAACGGGAGAATCTTCCCCTCCAGCTCCAAAATCTAGTAAACATTCAAGTTGATCCACGGAGTGTTAGTAGTAGCAGTCATGAAGAAGCTTATGCTGATGTTGATAGTACTCAAGGCACCTCACCAGAAGACGGGGATCTAAGATTCCAAGACCATTTGCACACTCAAAATAATTCACCTTCACAAGATGACATCCAGCAACAGCTTATGAATTGTATAAAGGAGCTTGAGAAGGAGAATAAGATGCTTGTTCCCTTTTTTTGTGGTCATGTGGACAAATACCTTGAAGCCGAATTTGGCTCCAAAGAAGAACCGTATGCTGATATCAACTTTGTGTTGGATGCACTTCCATCGGAAATTATGAGGCGCCTTAAGGAAATCGTGAAGCTGATGGTAGACGGAGGTTTCGTAGAGGAATGCAGCGACATTTACAGCACATGGCGAAGGGAGTTTGCAGAACAGTGTCTACGAGAACTTCTGCAATTTCAATTGCCCATCAAAATGGACTTTTGGAAGTGGTCAGCAGCGTGCAAGGCAGCTTGGAAGATGTTTTTTCCCAATGAAAGAAGACTCTGCGATTTCCTCTTTTCAGGTTTATCTGTCGCTGCGGATGTCTCCTTCGATAAATTTTGCAAGAGTCTGACGACTGTTCTACTGGAATATGCCCATACCATAACAACTCAGAGCTATACGCAGTATACGCTTCTCGTGGACGCCCCTAGAATGTTGATGTCATTAGGCAAGCTGGAACCGGAGTTCATCGCTTATAACAATTTGTCGTTCGTACGTGATGTTCGAGACATTCAGCAAAGATTGGCTATGATAAACAGCTTTAGGTATATTATTTACCCTGATATTGTGGAGGCACCTGCTACCGACGGAGGGCTTCATCTCATTACTAAGGAATCAATGAACTACATCCTTGGAATTTGTGAAGGTATGATATACCAGAGGGATTGTCAAACTTACTGCATCGAAAATTCTTCATTTTGGGTGGTGATAGGAAAGATGATTGAGTTGTTAGAGAGCGAGTTGGAACTCGAGTCTACACGCTTATACGGTGACCGCGCATTGCGCTATATTTTTATGATCAATAATCTCATACACATAAACCAAAGGACATGTGATTTGAAATTCGACGATGAATGGTTTCAACAACAAAAACGAAAGGTGAGACAAAAGTGTAACCTGTATTATGAGTGGACGTGGAACAAGATGATGGATTTTTTGACGGTTGAGACAAATGAGTCCGGGGAAGTGGTAGCGGATTTAATGATAAAAAAGATCCGTTTGTTCAACCTGCACTTTGAGGAGACATGCACACTTCAATCTACATGGATGGTCTCTGATAAAAAACTGAGGAAACGAATAACAAAACACATTGAAGGGTTCTTGTTGCCAGAATATGAAAATTTTTGTGGCAGCTTTCTAGCCGTTCTTGGTGATGAAGCTTGCTGTGGTGTTTCACTTGGGAGTAAGTTTATGAATGATGTGTTACTTAGATACGATGGAGTTGAAACCAATGAAGATGAGGTTGTTGTGGAAGGTGAAGTTGTTCAACCTAAAGTTGAGAGAGAGGGTGAGGATGAGGTTAGTGAAGAAGGGAAGGGTAAAGGAGTGGATGATGTTGCTGAAGGGGAGGGTGAGGATGAGGTTGTTGTGGAAGACGAGAGTGAGGGAGGGGATGATGTTGTTGTTGAAGGGAATGGTGAGGATGAGTTTGATGTTAGTAGTTGGATTGAGTCCCAAGACGATTTTTTCAGTGAAGATTGTATGTGTGTTTAA 2346 0.4228 MQTLLSFLRKTTMAMLNQILRSLKKPKVLRLVCLASSVVGLLCYALSSSFNHLLGNWSWWKMLLYIVFSFIVFLAVLFAPARSRSTSLRLESHVSFLVLIITSVYSFLFDNLVKGKPDAYSLVSCAAFATMSLGLSNLTQFGFQIDLLYFFCGGLLVQLMEIKMWLVIVGGSFSYSLIQICDYPRHTQRENLPLQLQNLVNIQVDPRSVSSSSHEEAYADVDSTQGTSPEDGDLRFQDHLHTQNNSPSQDDIQQQLMNCIKELEKENKMLVPFFCGHVDKYLEAEFGSKEEPYADINFVLDALPSEIMRRLKEIVKLMVDGGFVEECSDIYSTWRREFAEQCLRELLQFQLPIKMDFWKWSAACKAAWKMFFPNERRLCDFLFSGLSVAADVSFDKFCKSLTTVLLEYAHTITTQSYTQYTLLVDAPRMLMSLGKLEPEFIAYNNLSFVRDVRDIQQRLAMINSFRYIIYPDIVEAPATDGGLHLITKESMNYILGICEGMIYQRDCQTYCIENSSFWVVIGKMIELLESELELESTRLYGDRALRYIFMINNLIHINQRTCDLKFDDEWFQQQKRKVRQKCNLYYEWTWNKMMDFLTVETNESGEVVADLMIKKIRLFNLHFEETCTLQSTWMVSDKKLRKRITKHIEGFLLPEYENFCGSFLAVLGDEACCGVSLGSKFMNDVLLRYDGVETNEDEVVVEGEVVQPKVEREGEDEVSEEGKGKGVDDVAEGEGEDEVVVEDESEGGDDVVVEGNGEDEFDVSSWIESQDDFFSEDCMCV 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3387g00005 781 SUPERFAMILY Cullin repeat-like 290 663 IPR016159 -
Vium3387g00005 781 MobiDBLite consensus disorder prediction 210 231 - -
Vium3387g00005 781 Gene3D Exocyst complex component Exo70 233 670 - -
Vium3387g00005 781 MobiDBLite consensus disorder prediction 210 251 - -
Vium3387g00005 781 MobiDBLite consensus disorder prediction 731 757 - -
Vium3387g00005 781 MobiDBLite consensus disorder prediction 709 730 - -
Vium3387g00005 781 Pfam Exo70 exocyst complex subunit 359 663 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium3387g00005 781 PANTHER EXOCYST COMPLEX PROTEIN EXO70 234 664 IPR004140 GO:0000145|GO:0006887
Vium3387g00005 781 MobiDBLite consensus disorder prediction 709 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3387g00005 Vium-Chr3387 59323 63182 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3387g00005 291 669 EXO70 exocyst subunit family AT5G58430 32.029 9.78e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3387g00005 - - vum:124834304 1456.43