Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3387g00003 ATGTCGAACTCATTGGGCAAGCTGGTTCTGAATTTCACTTCAGAGACGTCGTTTGTAGATGATATTCAAGACGTTCGGCAAAGATTGGCTATGCTAAACAATTTTGGGCTTATTGTTTACACTAATAATGTGCAGGCACCAGTCACCGTCAGAGGGCTTCATCTAATTACTATGGAAGCAATGGATTACATCCATTGGATAACAAAGAAGAGGGCTGATCGATCTGACAGCATCGGAAATTTTTTATTTTGGGTGATGATAGTAAGGATGATTGAGTTGTTAGAGAACGAGTTGGTAGCCAAACAAAACGCAGCAAAGGTGGAACAATACTGCAACGTGCATCTAAGAAGTAAGTCACAACAAGCTAATGCTGATGTTGATAGTACTCTTGGTACCTCACCAGAAAATCTAAGAAGGATGTCACAACAAGCTAATGCTGATGTTGATACTTCTCTTGGTACCTCACCAGAAGATGGGGATATTAGATTTCGAAGCCATCTACTCATTCAAACCAGTTCACATTCACAAGAAGATGTTCTTATCATCCAACAACTCACGAACTGTGTAAAGGAGCTTGAGAAGGAGAATCAGATGCTTGTTCCCAGGGTTTGTAGTCACGTGGACAAATACCTTAAAGCCGTGTTTGACCCCAAGGAAGTACCGGATCCCTACATTAACTTGGTGATGGATTCACTTCCATCGGAAATTATGAGGCACCTCAAAGAAACCGTGATGCTGATGGTGAATGCAGGTTTCATGGAGGAATGCAGCGACATTTACATAAAATGGCGAAGGGAGTTTCTAGAACAGTGTCTGCGGGCACTTGGGTGGCAATTTCAGACGCCCAGCAATGACGATTTTGAGAAGTGGTTAAAAACGAGCAAGGCAGCTGCAAAGGTACTGTTTCCCAATGAAAAGAGACTCTGCGATTATCTCTTTTCAGAGAGACGTTTTGATGCGGATGTCTTCTTCGAGAAGGTTTACAAGAAACTGACGACTGGTCTACTGAGTTTTGCCGATATCACCATAACAACGGAGAGCCATTTGCCGAATCTTTTGTCCAACATCGTCCCTAAAATGTTGGAATCATTGCACGAGCTGATAGGGGAGATCTCAGCCATGTGTTTTCCCAAATTGTCGTGCGTACCTGATCTTGAAGACTTTCGGAAAAAATTGTCTATTTTATGCGGTTTGAGGAATACTATTTATACTAATAATGTGCAGGCACCTGTCATCCACGGAGGGCTTCATCTGATAACTTGGGAAACAATGAACTACATCCTTGATAATTCTGGCAACATTGGATATTCTTCATTTTGGGTGGTGATAGGAAGGATGATTGAGTTGTTAGAGAGCGAGTTGGAAGTGAAATCTAAAGACTACTACGCTGACCCCGCATTAGGCTATATTTTTATGATCAATAATCTCAGCTACATAGAACAAAAGACGCGTGATTTAGAATTCCACGATGATTGGTTTCGACAAAACACAGCAAAGGTGGAACAAAAGTGCAACCTATATCTAAGAAGGTCGTGGAATAAGATGGTGGAGTTTTTGAAGGTTGAGACAAAGGAGTGGGCCGAAGCTCATGTGGTAGCGGAGTTAATGATAGAAAATATCCGTTTGTTCAACCTGCACTTTGAGGAGACATGCACAATTCAATCTACATGGACGGTCTCTGATAAACAACTGAGGGAACGAATAATAAAATCCATTGAAGGGTTCTTGTTGCCAGAATATGGAAAATTTTATAACAGCTTTCTAGTTGTTCTTGGTAATCAAGCTGACGAGTATATTGAGTTTGGATTTCAAGACATTCGAAATTGTCTCAGCAATTTGTTTCTTCTAGATGAGGAGACGAATCTAGAATACAAGAAAAATGTATGA 1887 0.4102 MSNSLGKLVLNFTSETSFVDDIQDVRQRLAMLNNFGLIVYTNNVQAPVTVRGLHLITMEAMDYIHWITKKRADRSDSIGNFLFWVMIVRMIELLENELVAKQNAAKVEQYCNVHLRSKSQQANADVDSTLGTSPENLRRMSQQANADVDTSLGTSPEDGDIRFRSHLLIQTSSHSQEDVLIIQQLTNCVKELEKENQMLVPRVCSHVDKYLKAVFDPKEVPDPYINLVMDSLPSEIMRHLKETVMLMVNAGFMEECSDIYIKWRREFLEQCLRALGWQFQTPSNDDFEKWLKTSKAAAKVLFPNEKRLCDYLFSERRFDADVFFEKVYKKLTTGLLSFADITITTESHLPNLLSNIVPKMLESLHELIGEISAMCFPKLSCVPDLEDFRKKLSILCGLRNTIYTNNVQAPVIHGGLHLITWETMNYILDNSGNIGYSSFWVVIGRMIELLESELEVKSKDYYADPALGYIFMINNLSYIEQKTRDLEFHDDWFRQNTAKVEQKCNLYLRRSWNKMVEFLKVETKEWAEAHVVAELMIENIRLFNLHFEETCTIQSTWTVSDKQLRERIIKSIEGFLLPEYGKFYNSFLVVLGNQADEYIEFGFQDIRNCLSNLFLLDEETNLEYKKNV 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3387g00003 628 PANTHER EXOCYST COMPLEX PROTEIN EXO70 182 614 IPR004140 GO:0000145|GO:0006887
Vium3387g00003 628 MobiDBLite consensus disorder prediction 122 152 - -
Vium3387g00003 628 MobiDBLite consensus disorder prediction 122 155 - -
Vium3387g00003 628 Gene3D Exocyst complex component Exo70 164 621 - -
Vium3387g00003 628 Pfam Exo70 exocyst complex subunit 289 427 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium3387g00003 628 Pfam Exo70 exocyst complex subunit 432 611 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium3387g00003 628 SUPERFAMILY Cullin repeat-like 199 614 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3387g00003 Vium-Chr3387 43522 45543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3387g00003 217 614 EXO70 exocyst subunit family AT5G58430 34.554 1.87e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3387g00003 - - var:108336450 1226.46