Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3387g00002 ATGCAAACCTTGCTCTCTTTTTTGAGAAAGAATACAATGGTCATGCACAACCAAATTCTGAGATGGCTGAAGAAACCAAAGGTACTAAAACTTGTATGTCTTGCTTCATCTGTTGTTGGACTGTTCTGTTATGCTCTCAGTTCCTCTTTCAACCATTTACTGGGAAACTGGAGCTGGTGGAAGATCCTTCTTTATATTGTTCTCAGTTTCATCATTTGTCTAGCCATCTTTTTCACACCGGCAAGGTCAAGTTCCACCTCTTTCCGGCTGGAAACTCATTTGGCATTTTTGGTTCTGATAATCACTTCTGTTTGTTCCTTTTTGTTTGATAACGTGGTGAAGAGTAATCCAGATGTATACAACCTCATCTCTTGGGCGGCTTTTGCTACAATGTCGCTTGGCTTGTCAAATCTCACTCAATTTGGATTCCAGATTGATCTACTATATTTCTTCTGCGGAGGTCTAACAGTACAACTCATGAAGATCAAATTGTGGTTAGTCACTGTTGGAGGGGGTTTCAGTTATTCCCTCCTCCAGCTTCGTTACTATCCGAGCGACACAGACGGGGAGAACCTTCGGCTCGAGGACCACAATCAAATAATCATTCAAGTTAATGACTCAGAGAGTGTTAGTAGTACAAGTCACGAAGAAGCTAATGCTGATGTTGATAGTACTCAAGGCACCTCACCAGAAGATGGGGATCTTAGATTCCAAGACCATCTACTCACTCAAAGCAATTCACATTCACAAGATGGAAGCGTTGATGATGGTCTTATCATCCAACAACAGCTCATGAATTGTATAAAGGAGCTTGAGAAGGAGAATCATATGCTTGTTTACATGGTTTGTAGTCACGTGGACAAATACCTTAAAGCCGTGTTCGACTCCAAAGAAGTACCGGATCCTGACATCAACTTAGTGATGGATGCACTTCCATCGGAAATCATGAGGCGCCTTAAGGAAACCGTGAAGCTGATGGTGGATGGAGGTTTTAAGGAGGAATGCAGCGACATTTACATCAAATGGCGAAGGGAGTTTCTAAAACAGTGTCTGCAGAAACTTGGGTTGCAAATTGAATTGCAATTTGAAGAGTCCAACGAATGGAAGATTATGAACTGGTTAGACACGTGCAAGGTAGCGGAGAAGATACTGTTTCCCAATGAAAGGAAACTCTGCGATTACCTCTTCTCAGGGTTTTCTGTCGCTGCGGATGTTTCCTTCGATAAGGTTTGCGAGGAACTGACGATTGGTTTATTAAGTTTGTCAATGCCACCATAA 1278 0.4218 MQTLLSFLRKNTMVMHNQILRWLKKPKVLKLVCLASSVVGLFCYALSSSFNHLLGNWSWWKILLYIVLSFIICLAIFFTPARSSSTSFRLETHLAFLVLIITSVCSFLFDNVVKSNPDVYNLISWAAFATMSLGLSNLTQFGFQIDLLYFFCGGLTVQLMKIKLWLVTVGGGFSYSLLQLRYYPSDTDGENLRLEDHNQIIIQVNDSESVSSTSHEEANADVDSTQGTSPEDGDLRFQDHLLTQSNSHSQDGSVDDGLIIQQQLMNCIKELEKENHMLVYMVCSHVDKYLKAVFDSKEVPDPDINLVMDALPSEIMRRLKETVKLMVDGGFKEECSDIYIKWRREFLKQCLQKLGLQIELQFEESNEWKIMNWLDTCKVAEKILFPNERKLCDYLFSGFSVAADVSFDKVCEELTIGLLSLSMPP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3387g00002 425 PANTHER EXOCYST COMPLEX PROTEIN EXO70 249 421 IPR004140 GO:0000145|GO:0006887
Vium3387g00002 425 MobiDBLite consensus disorder prediction 208 232 - -
Vium3387g00002 425 Gene3D Exocyst complex component Exo70 239 422 - -
Vium3387g00002 425 MobiDBLite consensus disorder prediction 208 235 - -
Vium3387g00002 425 SUPERFAMILY Cullin repeat-like 276 420 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3387g00002 Vium-Chr3387 41850 43490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3387g00002 300 422 EXO70 exocyst subunit family AT5G58430 44.615 4.65e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3387g00002 - - var:108336450 821.617