Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3383g00001 ATGGTTAACTCAAAAGGGCAAGTAGGAATTGACAAGAAGATTGAAGAAGTAGTATCATGGATAAAAGAAAACCCAAAACAGACTCGTCTTATAGGAATATGGGGGAAGGGAGGTGTTGGCAAGACAACTCGTGTAGAAGAAGTGTATAACAAACTACAATCTCAATATGAAGGTTGTTATTTCTTAGCCCACGTAACAGAAGAATTAAGCAGACATGGAATACTTTCATTGAAGGACAATTGTTTTTCTAAACTCTTGGGATATGATGTGAAAATTGTCTCGCCAAATTCGTTGCCCAAAGATATTGTTAGGAGAATTGAAAGTATGAAGGTTCTAATTGTTCTTGATGATGTTAATGATTCTTCAAAACACCTTGAAAAAATGGTTGAGACAATTCTAGGTAATTTTTGGATCATCACTACACTTTTCAATTTGAATGCCTATAACCAGAGTGATTATAGAAGGGAGTACAATAGGCTATCAGAACGTGTGATCCTTTATGCTAAAGGTATTCCATTGGTGATTAAAGTTTTGGCTGGTCATCTGCGTGGAAAGAAAAAGGAAGAATGGAAACGTGAGTTAGATAAGCTTGAAAAAATGCCTCAGAGGAAAGTTTATGAGGTAATGAAACTAAGTTATGATGGTCTAGAGCACAAACAGCAACAAATGTTTCTAGACCTTGCATGTTTCTTTCTGAGAACACATGAACGAGTAAATGTTGGCTATCTAAAATCTTTATTGAAAGATAATGAAAGTGATAACTCAATTGATTTTGAGTTTGTAAGGCTGAAGGACAAAGCTCTTATAACTTTCTCAGAGGATAATAACTTTGTATCCATGCATGATAATTTACAACAAATGGCTTGGGAAATTGTTCGACAAGAGTCTATTGAAGACCCTGGAAAACGCATTCGGTTGTGGAATCCCAGTGAAACATATGAAGCATTGAAATATGTCAAGGGTATTGATTCCATTAGAAGCATAGTACTTCACTGGCCAGCAATTAAGAAGGAAAGGTTAAGGCCTCATATATTTGCAAAGATGAGCAGACTGCAATTTCTGGAAATTGACGACTTATATCATCATAATTCTGTCGAACCATTTGATATTCTTGGTGATAACACCTGCTGGCCCAAATGGCAAAAGGCTCGGATTGCTGATATTCTTGTTGAAGGACTTCATTTTTTGGCTACTGAGCTGAGATTTCTTTGTTGGTATCACTATCCTCTAGAATCCCTGCCAGAGAATTTTTCTGCAGAAAAACTTGTAATCTTGAGATTGCCACACAGCAGAATGGAAAAACTCTGGCTAGGAGTTAAGAATCTGGTGAATTTAAAAGAACTTGACCTTTCTAAATCCAAGAAGTTAAAGGGGTTGCCAGATTTATCAAAAGCCATAAATCTTGAATTGCTGATTCTCAGGAGTTGTTCCATGTTGACTAGCGTTCACCCATCTATTTTCTCTCTATGCGAGTCCCTTACAATACTTGCAAGCTGTTCCAATTTACATGGCCTCAGTTATCTCAACCTTGATTTTTGTGAGAATCTAATGAAATTCTCACTGATTTCAGACAATATGAAAGAACTCAGATTGAGATGTTCAAAGATCAAAGTACTTCCTCTTTCATTTGGACACCAAAGGAAGCTCGAATTTCTTCATCTGGAAGAAAGTGGCATCGAGAGATTACCTTCTCTGAAAAATCTCACTCAACTTCTACATCTAGATGTAAGCTTTTGTGATAAGCTTCAAACAATAGCTGAGCTTCCACCGTTCCTTGAGAATCTGAATCTCCAATATTGCACTTTACTTCAAACTATACCAAAGCTTCCATCATCACTCAAAACGCTAAATACTGAAGCATGCACTTCACTTGAGACTCTACCAGAGCTTCCCCCATCCATTGAAATCCTTAATGTTGAATCATGCTCTTCACTTGGGACAATACCAGAGCTTCCTCAATGTCTTCAAACTTTAAACGTCCAATGTTGCCATTTACTTCGAACTATACCAAAGCTTCCCACATGCCTTAAAACTCTACACACCAAAAACTGCACTTCACTTCAGAATCTACCACAACTTTCCCCATTCCTTGAAACTCTAAATGCTACATACTGCAAATCATTGAAACGTGTTTTGTTTCCTACAGTAAAAGATGAAAAACTAAAGGAAAACATGAAAAAGCTGCTTTTCTGGAATTGCTCAAACTTGGATAAACATTCTCTGGTAGCTATACGGTCGAATATGAAAATCAACATGATGAAATTTGTTGCAAACCATATATTTGCACCGGATCACAGTCATGTTGAAGATTACAGTGATTATGAATATAATTATCATTCTTATCAGGCTGTGTACGCGTATCCAGGAAGCATTTTTCCAGAGTGGTTGGAGTATAAGACAACAGAAGATTATATAATAATTGATGTCCCTTCTAGTATGAGTTCCTCCCTGGTTGGCTTCATTTTCTGCTTTGTCCTTGGTGAGTTTCAACACACAGACATAATCAGAAGAGTTGAATTCAAGATCACTGTAAGTGACGGTGGTGGTAAGGATGAAGGTGAAAGGGAGAGTGTAAGAATGTACATGGATTATTGGGATGACACGATTGAATCGGATAACATATGTGTGATGTACGACCAAAGATGTTCCCACTTCCTACTTAGCAGACCCAGAAGACTAACAAGCTTTAGAATCCAGGTTACAATGGAAGCAAGAATCTCCTTTGATGAAACTTTTAATGTACTGTTGCAGAAGGTTTTAAAAGGATTTGGAGTCAGTCCAATTTCGTTTGACAAATTGCGAAGCTCAAATTATACGTTTCGTTAA 2826 0.3712 MVNSKGQVGIDKKIEEVVSWIKENPKQTRLIGIWGKGGVGKTTRVEEVYNKLQSQYEGCYFLAHVTEELSRHGILSLKDNCFSKLLGYDVKIVSPNSLPKDIVRRIESMKVLIVLDDVNDSSKHLEKMVETILGNFWIITTLFNLNAYNQSDYRREYNRLSERVILYAKGIPLVIKVLAGHLRGKKKEEWKRELDKLEKMPQRKVYEVMKLSYDGLEHKQQQMFLDLACFFLRTHERVNVGYLKSLLKDNESDNSIDFEFVRLKDKALITFSEDNNFVSMHDNLQQMAWEIVRQESIEDPGKRIRLWNPSETYEALKYVKGIDSIRSIVLHWPAIKKERLRPHIFAKMSRLQFLEIDDLYHHNSVEPFDILGDNTCWPKWQKARIADILVEGLHFLATELRFLCWYHYPLESLPENFSAEKLVILRLPHSRMEKLWLGVKNLVNLKELDLSKSKKLKGLPDLSKAINLELLILRSCSMLTSVHPSIFSLCESLTILASCSNLHGLSYLNLDFCENLMKFSLISDNMKELRLRCSKIKVLPLSFGHQRKLEFLHLEESGIERLPSLKNLTQLLHLDVSFCDKLQTIAELPPFLENLNLQYCTLLQTIPKLPSSLKTLNTEACTSLETLPELPPSIEILNVESCSSLGTIPELPQCLQTLNVQCCHLLRTIPKLPTCLKTLHTKNCTSLQNLPQLSPFLETLNATYCKSLKRVLFPTVKDEKLKENMKKLLFWNCSNLDKHSLVAIRSNMKINMMKFVANHIFAPDHSHVEDYSDYEYNYHSYQAVYAYPGSIFPEWLEYKTTEDYIIIDVPSSMSSSLVGFIFCFVLGEFQHTDIIRRVEFKITVSDGGGKDEGERESVRMYMDYWDDTIESDNICVMYDQRCSHFLLSRPRRLTSFRIQVTMEARISFDETFNVLLQKVLKGFGVSPISFDKLRSSNYTFR 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3383g00001 941 Gene3D - 2 144 IPR027417 -
Vium3383g00001 941 Gene3D Ribonuclease Inhibitor 374 741 IPR032675 -
Vium3383g00001 941 SUPERFAMILY "Winged helix" DNA-binding domain 204 317 IPR036390 -
Vium3383g00001 941 SMART LRR_bac_2 442 462 - -
Vium3383g00001 941 SMART LRR_bac_2 631 651 - -
Vium3383g00001 941 SMART LRR_bac_2 589 609 - -
Vium3383g00001 941 SMART LRR_bac_2 546 565 - -
Vium3383g00001 941 SMART LRR_bac_2 610 630 - -
Vium3383g00001 941 SMART LRR_bac_2 652 672 - -
Vium3383g00001 941 PRINTS Disease resistance protein signature 105 119 - -
Vium3383g00001 941 PRINTS Disease resistance protein signature 440 456 - -
Vium3383g00001 941 PRINTS Disease resistance protein signature 30 45 - -
Vium3383g00001 941 Pfam NB-ARC domain 11 127 IPR002182 GO:0043531
Vium3383g00001 941 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 520 IPR044974 GO:0006952
Vium3383g00001 941 SUPERFAMILY L domain-like 348 713 - -
Vium3383g00001 941 Gene3D - 145 217 IPR042197 -
Vium3383g00001 941 Pfam Leucine Rich Repeat 421 440 IPR011713 -
Vium3383g00001 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 227 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3383g00001 Vium-Chr3383 4356 7978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3383g00001 547 772 WRKY Transcription Factor Family AT5G45050 29.457 1.40e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3383g00001 - - vum:124834295 1884.77