Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3382g00014 ATGGGGATTCCGGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAAGTAATTTGGATTGCTGGCCAGGTACTGAGTATCAATGGAGAAGATGCTGAAATTCAGATTAGTGATGAGAGGAAGGTTGTTTCCCATTTGTCAAAATTATATCCAAAGGATATCGATGCACCAGCTGATGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGCAGTGCTGCATAATTTGGAAACTAGATATGCGATGAATGAAATATATACTTATACCGGAAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACATCTCTATGATACTAATGTGATGCAAAGATACAAGGGATCAATGGTTGGAGATTTGAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGAAATGATGAATGATGTGAAAAGCAATTCTATTCTTGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTAGGTGGTCACACTGCATCAGAAGGCCGAACAGTTGAAAAACAAGTTCTAGAGTCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTTGGAAAATTTGTTGAGATCCAATTTGATAAGTTTGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGCGCTTCTCCTCCAGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAAATCATTTCACTACCTTAACCAATCCAATTGCTACGAATTAGTTGGTGTTAATGCTGCTCAAGAATACCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGACGAGCAGGATGCTATTTTCAGAGTTGTAGCTGGTATTCTTCATCTTGGAAATATTAACTTTTCAAAATCAGAAGAAACTGATTTTGCAGTTCTAGAAGAAGAAGAATCCAAGTTTCATCTGCAAACAACAGCAGAACTTCTTATGTGTGATGTGCATGCTTTGGAAGATGCACTGTGTAAGCGTATGATGGTTACTCCAGAAGAAATCATCAAAAGAAGTCTTGACCCTCTGGGTGCCACAGTTAGCCGGGATGGTTTAGCCAAAACCATATATTCTCGTTTATTTGACTGGTTAGTTCAAAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAGTGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTCCAAACAAATAGCTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTACAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAGGAGGAATATACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCTGGTGGAATTATTGCTCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCAACTCATGAAACATTTTCACAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATTAAGCCAAAATTGACACGTTCAGACTTCACTGTTTGTCATTATGCAGGAGATGTTCAGTATCAATCTGAGCACTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGAGATGCTAAGTGCTTCCAAATGTTCATTTGTATCAGGTCTTTTCCCCCCACTTTCTGAGGAGTCAGCCAAATCTTCTAAGTTTTCTTCCATTGGTTCTCGTTTCAAGCTACAATTACAACAATTGATGGACACACTCAATCTGACAGAGCCACACTATATTAGATGCGTGAAGCCAAATACACAACTAAAACCTTTCATATTTGAACATATGAACGTCATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGCGCTGGATTTCCCACTCACTGGACCTTTCATGATTTTATTACTCGATTATGGATTCTTGCTCCGGAGATTCTTCGTGGGAACTTTGATGAAAAAGATTCGTGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGGGAAACAAAAATATTCTTAAGAGTTGGTCAGATGTCTGAATTGGATGCTCGAAGGGCATTCCTGCTTAGTAGTTCAGCTACTGTTATTCAAAAGAATGCTAAAACTCGTTGTAGTCGGAAAACATATATTGATTTGCGAAAGAGCTCTGTTTTCCTACAATCCATTTGCAGAGGAGAATTGGCTCGAAGATTGTATTATCACATGAAATATAGGCAAGTTGCTGCAGTCAGAATTCAAAAGCAGATGCGACGAACACTAGCTAGGAAGCAGTATGTTGAAATAAAGTTCTGTGCAAATGTGTTGCAGACAGGTTTTCGAGCAATGGCTGCTTGTAATCAATTTAGATATAAAAAGCAAGCATATAGAAAGCAGACTAGTGCATCAATAACTATTCAGTCCTATTGGCGTCGACATAAAGCTCTCGTTGACTATCAGAACCTTAAGAAAGCACCAATCATTCAACAAAGCAGCAGCTCCTGTGATACACAGGAAGAGAAGGTTTCAGAGACTCCTCTGCAAAATGAAAGTCCTTCTATGGAAGAATCTTCATATCCCGTGCATGAAGAATCCTCAAATCCTGTGCAAGAAGACGAAAGTATTGAAGCTATCAGGGATTCTTCTAGTCCTCTCAAAGACACTGACAAGATTGAGGTTCTTGCTGTAGAAATAAAAAACTTAAAGGTAAAGTATAGTATATCTACTACCGAATATCTATAA 2856 0.3848 MGIPENIVVGSHVWVGDPEVIWIAGQVLSINGEDAEIQISDERKVVSHLSKLYPKDIDAPADGVDDMTKLAYLHEPAVLHNLETRYAMNEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGSMVGDLSPHVFAIAEAAYREMMNDVKSNSILVSGESGAGKTETTKMLMQYLAYLGGHTASEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKFGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPKSFHYLNQSNCYELVGVNAAQEYLSTKRAMDIVGISQDEQDAIFRVVAGILHLGNINFSKSEETDFAVLEEEESKFHLQTTAELLMCDVHALEDALCKRMMVTPEEIIKRSLDPLGATVSRDGLAKTIYSRLFDWLVQKINISIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLTRSDFTVCHYAGDVQYQSEHFLDKNKDYVVPEHQEMLSASKCSFVSGLFPPLSEESAKSSKFSSIGSRFKLQLQQLMDTLNLTEPHYIRCVKPNTQLKPFIFEHMNVIQQLRSGGVLEAVRIKCAGFPTHWTFHDFITRLWILAPEILRGNFDEKDSCKKILEKIGLTGYQIGETKIFLRVGQMSELDARRAFLLSSSATVIQKNAKTRCSRKTYIDLRKSSVFLQSICRGELARRLYYHMKYRQVAAVRIQKQMRRTLARKQYVEIKFCANVLQTGFRAMAACNQFRYKKQAYRKQTSASITIQSYWRRHKALVDYQNLKKAPIIQQSSSSCDTQEEKVSETPLQNESPSMEESSYPVHEESSNPVQEDESIEAIRDSSSPLKDTDKIEVLAVEIKNLKVKYSISTTEYL 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3382g00014 951 MobiDBLite consensus disorder prediction 868 903 - -
Vium3382g00014 951 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vium3382g00014 951 Gene3D - 667 733 - -
Vium3382g00014 951 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 CDD MYSc_Myo11 76 720 IPR036018 -
Vium3382g00014 951 FunFam Class V myosin 439 583 - -
Vium3382g00014 951 Pfam IQ calmodulin-binding motif 787 804 IPR000048 GO:0005515
Vium3382g00014 951 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Vium3382g00014 951 Pfam IQ calmodulin-binding motif 839 854 IPR000048 GO:0005515
Vium3382g00014 951 SMART iq_5 734 756 IPR000048 GO:0005515
Vium3382g00014 951 SMART iq_5 757 779 IPR000048 GO:0005515
Vium3382g00014 951 SMART iq_5 836 858 IPR000048 GO:0005515
Vium3382g00014 951 SMART iq_5 783 805 IPR000048 GO:0005515
Vium3382g00014 951 MobiDBLite consensus disorder prediction 904 922 - -
Vium3382g00014 951 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vium3382g00014 951 FunFam Myosin 2 312 426 - -
Vium3382g00014 951 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 MobiDBLite consensus disorder prediction 868 922 - -
Vium3382g00014 951 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 Gene3D - 786 834 - -
Vium3382g00014 951 Gene3D - 735 785 - -
Vium3382g00014 951 Gene3D - 252 310 - -
Vium3382g00014 951 PANTHER MYOSIN 784 891 - -
Vium3382g00014 951 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 Gene3D - 439 623 - -
Vium3382g00014 951 FunFam Myosin heavy chain 252 307 - -
Vium3382g00014 951 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Vium3382g00014 951 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 Pfam Myosin N-terminal SH3-like domain 10 45 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium3382g00014 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 783 IPR027417 -
Vium3382g00014 951 ProSiteProfiles IQ motif profile. 784 808 IPR000048 GO:0005515
Vium3382g00014 951 ProSiteProfiles IQ motif profile. 837 863 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3382g00014 Vium-Chr3382 234351 257840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3382g00014 1 869 Myosins gene family AT1G08730 71.577 0.0 1336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3382g00014 K10357 - gmx:100803485 1628.99