Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3382g00012 ATGATGGGGGAGAAGTTTTGTCTGAACGAAGAAGACAAGGGTGTGTTGGAGTCTGTATTGGGTGCAGAGGCTGTTGCGTTTTTCATTTCAGCACTTTCCAATAATGTCTTTTCCAGCGTTGTTGCTCCTTCTGTCGGTGCTGACTCGACCCTCCGTCAGAGGTTGTGCCAGCTTGTTGATGGTTCCAAGTGGAACTATGCAGTGTTCTGGCAAGTTGCTGGCTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGACGGGCATTGCAGTGATCCCAAAGGGAAGAGGAGTTCAATGGGGAAGGACGATGAGCAGGAGGTGAGAAAGATGGTGCTGCAGAAGCTTGATGCCTGTTTTGGTGGGTCTGTGTCGAAAGAGGCTAATTATGCAAGACTGGATAGGTTGTCTGATTTGCTCATGTTTTACTTATCCTCAATGTGTTACATATTCGGTTTTGATTCGCCATGTGGTCCTGGGAGTTCATTCAAATCTGGTAAATGGATTTGGACATCTGATGCTGCCGCTTGTTTGAATCAATTAGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTGAAATCTGGGGTGGTGGAGCTTGGTTCGAATGAAGTGGTGTCCGAAGAACAGGGTTTTGTGGAGATGGTGAAGACAGCATTTGGGGAATCCAGTCCCGGGCAGACTAAGGTGTTTCCGAAGATTTTTGGGCACGAGTTAAGCCTGGGGGATACAAAATCTCAGTCTATAACCATTAGTTTCTCCCCAAAGGTGGAAGATGATCCTGGTTTTACTTCAGACTCTTTTGAAGTTCAAGCACTGGGGTTGAACCATGCGTATGGAAATTCATCCAATGGAACTTTGGGGGACAGTAGTGAAGGGAAGATGTTCCCTCAATTGAATCAAATGATGGGTGGGAATTTTAATGCCCAAGCAAGGGTTCCTTGTCTAGATCTTGGTAATGAAGACACGTCCTCAATTCATGCAGATGAGCGGAAGCCCAGAAAAAGAGGTAGAAAACCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAGAGACGTGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTCATCACTGATCTCCAGATGAAGATCAAAGTGTTGGAAGCTGAGAAGAACATGATTAACAACAAGGACCAGAAGCTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGCCCTTTGGATACTCACCCTGTTTCTGATGTAGTTAAAACTTTCAGGGAGCATCAAATTGTGGCTCAAGACACCAATGTTTCTACTACTGATGATAAAATCATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCCATACAGTTGAAAGAAAAGCTTGAAGCGGCCCTATCCAAAAATTGA 1515 0.4482 MMGEKFCLNEEDKGVLESVLGAEAVAFFISALSNNVFSSVVAPSVGADSTLRQRLCQLVDGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDPKGKRSSMGKDDEQEVRKMVLQKLDACFGGSVSKEANYARLDRLSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKWIWTSDAAACLNQLESRSFLGKVAGLQTVVFVPLKSGVVELGSNEVVSEEQGFVEMVKTAFGESSPGQTKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSFEVQALGLNHAYGNSSNGTLGDSSEGKMFPQLNQMMGGNFNAQARVPCLDLGNEDTSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQKLSLPDMDFQEREDDTVVTVRCPLDTHPVSDVVKTFREHQIVAQDTNVSTTDDKIIHTFSIRTEGGEAAAIQLKEKLEAALSKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3382g00012 504 PANTHER MYC 41 500 IPR045084 GO:0003700|GO:0006355
Vium3382g00012 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Vium3382g00012 504 MobiDBLite consensus disorder prediction 326 359 - -
Vium3382g00012 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Vium3382g00012 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Vium3382g00012 504 CDD ACT_UUR-ACR-like 436 503 - -
Vium3382g00012 504 Coils Coil 398 418 - -
Vium3382g00012 504 CDD bHLH_AtAIB_like 349 427 - -
Vium3382g00012 504 Gene3D - 345 418 IPR036638 GO:0046983
Vium3382g00012 504 MobiDBLite consensus disorder prediction 330 359 - -
Vium3382g00012 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 420 IPR036638 GO:0046983
Vium3382g00012 504 FunFam Transcription factor bHLH13 345 419 - -
Vium3382g00012 504 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3382g00012 Vium-Chr3382 196364 198606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3382g00012 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.039 4.30e-155 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3382g00012 bHLH-MYC_N 8.1e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3382g00012 - - gmx:100819968 915.22