Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3382g00003 ATGACAGACATATTTGAAAACCAACCATCACCTGATTCTTCAAATTATGCATCAAGCAGTGGCTTCTGTGTGGAAGACAAGGAGATTGGATATGGAGCTGCAACATCAAAACATATATATCTTTTGGCCAACAAATCTGTTCTCCACTTCTTTTCCATCAAAATTGACCTGAATTATGCTCGCATGGTAATGGCAGAGTTGGTGGGTACTTTTATTTTGATGTTCTGTGTATGTGGAATCAGTGGAAGCACAGAAATCCAAAAGGGTGCAGTGGGCCTTGCGGAGTATGCAGCTACAGCAGGGTTAACAGTGGTGGTGGTAATTTTCTCTATAGGGCCAATATCTTGTGCGCACGTTAACCCAGCTGTCACAATAGCCTTTGCTACAATGGGTCAATTTCCATGGTTGAAGGTTCCAGTTTACATAATAGCACAGACAGTAGGTTCTATGTCGGCAACATACATAGGTAGCCTTGTATACGGCATAAAATCAGATGCTATCATGACCATGCCACTCCAAGGGTGCACCTCTGCCTTCTGGGTGGAGCTTATTGCAACTTTCATCATCATGTTCCTCGTTGCAGCTTTGACATCTGAATCTCAATCAGTGGGCCATTTATCTGGCTTTGTTGCTGGTGTAGGAATTGGCCTTGGTGTGCTAATCACAGGACCAGTCTCAGGTGGATCAATGAATCCTGCAAGATCGTTAGGTCCGGCAATTCTGTCATGGAAGTTTAAGAACATATGGATATACATGGTAGCCCCGAGTGGTGGAGCTGTGGCAGGAGCTGCAATGTTTCGCTTCCTACGCATTCGAGACCAACATTCTACTACGTTGTTCTCCCCAAACATCAGTGTCGCTGGTCGTCCCATACCCTTTTGCTCAAGGAGAAGTGGGGCCATGATTTTGCTGGTAGAGAAAATTTGGAGTTTGTTCTGTCAAAGAAAATGTCATGGGAAGAAAAATATCAGATGGTGCATATCGAAAGAATAG 993 0.4411 MTDIFENQPSPDSSNYASSSGFCVEDKEIGYGAATSKHIYLLANKSVLHFFSIKIDLNYARMVMAELVGTFILMFCVCGISGSTEIQKGAVGLAEYAATAGLTVVVVIFSIGPISCAHVNPAVTIAFATMGQFPWLKVPVYIIAQTVGSMSATYIGSLVYGIKSDAIMTMPLQGCTSAFWVELIATFIIMFLVAALTSESQSVGHLSGFVAGVGIGLGVLITGPVSGGSMNPARSLGPAILSWKFKNIWIYMVAPSGGAVAGAAMFRFLRIRDQHSTTLFSPNISVAGRPIPFCSRRSGAMILLVEKIWSLFCQRKCHGKKNIRWCISKE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3382g00003 330 Pfam Major intrinsic protein 59 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3382g00003 330 SUPERFAMILY Aquaporin-like 57 276 IPR023271 -
Vium3382g00003 330 PANTHER AQUAPORIN NIP2-1 54 274 IPR034294 -
Vium3382g00003 330 ProSitePatterns MIP family signature. 118 126 IPR022357 -
Vium3382g00003 330 Gene3D Glycerol uptake facilitator protein. 44 279 IPR023271 -
Vium3382g00003 330 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3382g00003 330 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3382g00003 330 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3382g00003 330 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3382g00003 330 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3382g00003 330 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3382g00003 Vium-Chr3382 77412 79474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3382g00003 56 274 Major Intrinsic Protein MIP AT4G10380 41.096 3.16e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3382g00003 K09874 - gmx:100817660 402.134