Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00035 ATGGTGAAGCCTGGTAGCGTGGAAAAAACTACTGAGGAGCGAACCAATACGTCGTACAGGGGAGTACGGAAGAGGAAGTGGGGCAAGTACGTGTCGGAAATTAGGCTTCCCAACAGTCGCCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGCGCTTTCGACGCGGCCATGTTCTGCTTACGTGGCAGCGGCGCCAAATTTAACTTCCCGAATGACCCGCCCAACATCGCCGGGGGGAGGACCATGACCCCCCCTCAGATTCAGATAGCTGCGGCTAGTTTCGCCAATTCGGAGCCCCAAAAAGAGTGTTCCGGTCAGCAACACGTGGAGTCTTTAGCTTCGGACGAGGAAACGGCGTCGTTCAGGTTGGAGTCGTCGTCTCCTCCTCTCTCCGACGTGTCGGTTCAGAACGACCCCATATTCCAAAACGGGTCATTTCGCGACCCGTTTTCGGATCTCGGTTCGGGCAGTTTCGCCCCCGAGTTCTCCGATTTTCCGAGTTTCGACGATTTCAGCCGGGATTTCTTCTTGCCGGGGCTTCCTAGTTTCGATGACGGAGAAGAGAACGTGGACGGGATGATAGTCCAGGACCCGTTCTTGTGGAACTTCTAA 627 0.5582 MVKPGSVEKTTEERTNTSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPNDPPNIAGGRTMTPPQIQIAAASFANSEPQKECSGQQHVESLASDEETASFRLESSSPPLSDVSVQNDPIFQNGSFRDPFSDLGSGSFAPEFSDFPSFDDFSRDFFLPGLPSFDDGEENVDGMIVQDPFLWNF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00035 208 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Vium3380g00035 208 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Vium3380g00035 208 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vium3380g00035 208 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Vium3380g00035 208 MobiDBLite consensus disorder prediction 1 22 - -
Vium3380g00035 208 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vium3380g00035 208 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Vium3380g00035 208 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vium3380g00035 208 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vium3380g00035 208 MobiDBLite consensus disorder prediction 119 139 - -
Vium3380g00035 208 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Vium3380g00035 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00035 Vium-Chr3380 320556 321579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00035 17 208 AP2-EREBP Transcription Factor Family AT1G19210 47.761 1.67e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium3380g00035 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00035 - - gmx:100802508 290.812