Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00034 ATGGCCAGCACTCAGCTCACAGCAATAGCGTCATCAGTCTCTACGACGTCGTTGGAAAGGCTTCGACCTTCGACATTTCAGATGGGCCGTGTGAGGATTGGCAATCTTCCCCAGAGGTCCTTCAGGGGGTTGGTCGTTAAAGCTGCCACTGTTGTTGCCCCTAAGTACACCGCAATTAAGCCTCTGGGTGACAGAGTACTGATAAAAGTTAAGGAAGCAGAAGAGAAAACTGACGGTGGGATTTTGCTTCCCTCAACCGCTCAAACTAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGTGAAGGAAAGACAGTTGGGAAGTCAAAAGTAGATGTTAGTGTGAAGACTGGTGCGCAAGTTGTGTATTCGAAATATGCTGGTACCGAGGTAGAATTCAATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTCGGTATCCTTGAAACTGATGACATCAAGGAACTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCCGAGGAAAAAACTGCTGGTGGTTTATTACTTACCGAGGCAACCAAGGAGAAGCCTTCTATTGGAACAGTGATAGCAGTTGGTCCAGGGCAATTGGACGAGGAAGGCAACAGAAAACCGTTGTCCGTGACACCGGGGAACACAGTATTGTACTCCAAATATGCTGGAAATGACTTCAAGGGAAAAGATGGTGACTATATTACCTTGAGGGTCTCAGATGTCATGGCTGTCCTCTCCTAG 750 0.4693 MASTQLTAIASSVSTTSLERLRPSTFQMGRVRIGNLPQRSFRGLVVKAATVVAPKYTAIKPLGDRVLIKVKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEGKTVGKSKVDVSVKTGAQVVYSKYAGTEVEFNGTKHLIVKDDDIVGILETDDIKELKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGQLDEEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGDYITLRVSDVMAVLS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00034 249 CDD cpn10 59 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 FunFam 10 kDa chaperonin 155 249 - -
Vium3380g00034 249 SUPERFAMILY GroES-like 155 248 IPR011032 -
Vium3380g00034 249 Hamap Co-chaperonin GroES [groES]. 58 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 Pfam Chaperonin 10 Kd subunit 157 247 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 Pfam Chaperonin 10 Kd subunit 59 148 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 ProSitePatterns Chaperonins cpn10 signature. 157 181 IPR018369 GO:0005524|GO:0006457
Vium3380g00034 249 PANTHER 10 KDA HEAT SHOCK PROTEIN 154 247 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 Hamap Co-chaperonin GroES [groES]. 156 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 Gene3D GroES chaperonin 51 151 IPR037124 GO:0006457
Vium3380g00034 249 Gene3D GroES chaperonin 152 249 IPR037124 GO:0006457
Vium3380g00034 249 ProSitePatterns Chaperonins cpn10 signature. 59 83 IPR018369 GO:0005524|GO:0006457
Vium3380g00034 249 CDD cpn10 157 248 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 PIRSF Cpn21 1 249 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vium3380g00034 249 PRINTS 10kDa chaperonin signature 59 74 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 PRINTS 10kDa chaperonin signature 81 102 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 PRINTS 10kDa chaperonin signature 136 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 PRINTS 10kDa chaperonin signature 115 127 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 SUPERFAMILY GroES-like 57 150 IPR011032 -
Vium3380g00034 249 SMART Cpn10_2 58 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 SMART Cpn10_2 156 248 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vium3380g00034 249 FunFam 20 kDa chaperonin, chloroplastic 52 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00034 Vium-Chr3380 300416 303198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00034 1 249 Calmodulin-binding Proteins AT5G20720 75.099 1.51e-132 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00034 K04078 - gmx:100814751 437.187