Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00033 ATGAAGGCTCCTCCAAATGGCTACTTGCCTAATTCCAGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCATGTGCTGGACCATTGGTTTCCTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTTCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCGTTCCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCACGCTGATCCTGAAACTGATGAGGTCTATGCGCAGATGACTCTTCAACCTGTTACTAAATATGACAAGGAAGCAATATTGGCATCTGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGAAGAGCTGCAGAGAAAATATTCCCACTTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAGTACTTGGACATTTAGACATATCTATCGAGGACAACCAAAGAGGCATCTATTGACTACGGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCAGTTCTTTTTATCAGGGATGAAAAACAACAACTTCTTTTAGGTATAAAAAGAGCTAACAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGGATTCTTGCTGCCGCAGCTCATGCTGCTTCAAATAACAGTCCATTTACTATTTTCTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCTCTCTTCAATCAAGCTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGAGTCAGGGGTACGCAGACATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAGCATTCTCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCACTTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCTCCTCCATTCTTTAGGCCGAAGTTTCCCAAGCAACCAGGAATGCCAGATGATGATTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGAATGAAGGATGCTTCAAGTTCAATCTTCCCAGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAAAATAATCAGTTCTCCGCTGCCCAATCTGGATTTATGTCCCCATCCATGCTTTCATCCAATGCACTGCATGGTAACATTCCCACTGATGATCCATCCAAATTATTGAACTTTCAAGCTCCTGTCCTCTCTGCACCAAATCTACAATTTAACAAACCTAATTTACCAAACCAAGTCAACCAATTGCAACAACCCCAAACGTCGTGGCCTCCGCAGCATCAACAACAGCAGAAGGTGCAGTCATTGATGCCAACAACCTTAAACCCGCTCCAACAGCAGCAACAGAGGCAACAACAGCTGCCTGTACTGCAAAACCTGTCACAACCACAGCAACAACAGCCCCAAATGCCTCAACAGAGACCACAACAGCCACAGCAACAACAGTCATGTCAACAGACCATCATGAATAATGAGGCAGTTTCTTCTAACCAGATTCAAAATCAGTGTGTGCAGCAACCAGTGACATACTCCCAGCTTCAGCAACAGCAATTACTCTCAGGAAATATCCCACCCCAACAAAGTTTTCAATCACCCAATAAGAATGCATTGCTGATGACATCCTTACCGCAAGATTCTCAGTTTCAACAAATTGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAGACACAGTTGCAATCATCTCCATTGCAGTTATTGCAACAAAGCATGTCACAGAGGACGCCACAGCAACCACAAATGACACAAATGTCACAGCAAAACAGCTCAGAGCAACAACCACAGTTGCAGTTGCTACAGAAATTGCAGCAACAACAACAGCAACAACAACAGCAACAACAGAAACAGCAACAACTCCTTTCCACTTCTAGCCCCCTTTTGCAGTCTCATCTTCTACAGCAACAAAATACTCATCAACAAAACCAGCAATTACCGCAGCTGCCTCTATCACAGTGTCACCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTTTCAATGGCAACAACTACTCTTCTTCGGCTTTGATGCAAACACAGCAGTTTCCTATGAACCAATCCCAAAATACACAGAAATCATTAACTAATACTAGAGCTCCTTCAACACTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCGTCTACTAATAACTGCCAGATATCTCCTTCAAATCTGATTAAAAGAAATCAACAGTTACCAACCACATTAGGAGGACCTTCGGTAGTTGAACCCACTAATCATTTGATACAGGAGCTTCATAGAAAGTCTGAGATGCAGATCAAACACGAATTACCCTGTGTAAGAGGACCTGACCAGCTGAAGTGCAAAGGGACAATTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACTCTATCGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAGTTTCTGCATGGATGGTGATGTCCAATCGCACCCAAGAAATAATCTTCCATTTACCTCTAATCTTGATGGATTAACACCTGATACTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTTTCCACTGCTGCCATTAGTTCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCCAGTGACATTGCCATCAATGACCCTGGGGTTTTGAATAACGGCTTGTGGGCTAGTCAGACTCAAAGAATGAGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATCGATGTTACCCGTTACAAGGGGTATGATGAACTCCGGCATGATTTGGCTAGGATGTTTGGAATTGAAGGGCAGCTAGAAGATCCTCAAAGGACAGAGTGGAAACTAGTCTACGTAGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTAGATGGAGATTTAGGACATGTTCCAGTTCCCAATCAAGCTTGTAGTGGAACAGATAATGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCGTTTAACCGATAA 3360 0.4375 MKAPPNGYLPNSSEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVTKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPLLDFSMQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALFNQASLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKHSQWRNLQVGWDESTAGERPSRVSLWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDDSDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQSGFMSPSMLSSNALHGNIPTDDPSKLLNFQAPVLSAPNLQFNKPNLPNQVNQLQQPQTSWPPQHQQQQKVQSLMPTTLNPLQQQQQRQQQLPVLQNLSQPQQQQPQMPQQRPQQPQQQQSCQQTIMNNEAVSSNQIQNQCVQQPVTYSQLQQQQLLSGNIPPQQSFQSPNKNALLMTSLPQDSQFQQIDQQASLLQRQQQQTQLQSSPLQLLQQSMSQRTPQQPQMTQMSQQNSSEQQPQLQLLQKLQQQQQQQQQQQQKQQQLLSTSSPLLQSHLLQQQNTHQQNQQLPQLPLSQCHQPQQLGNNAFSMEKLFNGNNYSSSALMQTQQFPMNQSQNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPSNLIKRNQQLPTTLGGPSVVEPTNHLIQELHRKSEMQIKHELPCVRGPDQLKCKGTIADQMEASSGTSYSIDPNNIHQNFPLPSFCMDGDVQSHPRNNLPFTSNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWASQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00033 1119 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vium3380g00033 1119 MobiDBLite consensus disorder prediction 763 805 - -
Vium3380g00033 1119 SUPERFAMILY CAD & PB1 domains 1006 1070 - -
Vium3380g00033 1119 MobiDBLite consensus disorder prediction 470 503 - -
Vium3380g00033 1119 FunFam Auxin response factor 124 228 - -
Vium3380g00033 1119 MobiDBLite consensus disorder prediction 1097 1119 - -
Vium3380g00033 1119 Gene3D - 289 360 - -
Vium3380g00033 1119 MobiDBLite consensus disorder prediction 528 552 - -
Vium3380g00033 1119 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium3380g00033 1119 Coils Coil 672 699 - -
Vium3380g00033 1119 MobiDBLite consensus disorder prediction 638 676 - -
Vium3380g00033 1119 FunFam Auxin response factor 289 361 - -
Vium3380g00033 1119 CDD B3_DNA 125 217 IPR003340 GO:0003677
Vium3380g00033 1119 Gene3D - 123 227 IPR015300 -
Vium3380g00033 1119 Gene3D - 987 1081 - -
Vium3380g00033 1119 ProSiteProfiles PB1 domain profile. 992 1085 IPR000270 GO:0005515
Vium3380g00033 1119 SMART B3_2 126 228 IPR003340 GO:0003677
Vium3380g00033 1119 FunFam Auxin response factor 987 1081 - -
Vium3380g00033 1119 Pfam AUX/IAA family 990 1078 IPR033389 -
Vium3380g00033 1119 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vium3380g00033 1119 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vium3380g00033 1119 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1081 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00033 Vium-Chr3380 291764 300514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00033 1 489 B3 DNA Binding Superfamily AT1G19220 82.209 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium3380g00033 AUX_IAA 3.1e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00033 K14486 - gmx:100804628 998.808