Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00032 ATGCTGCAACGGGCACGGGGAAGACTGCTGCGTATCTCGCTCCGATTGTTCATCTCTTGCAGGGTTACGAAAATCGGATTCAGCGCTCTGATGGAACATTTGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCATTGGATTGTTCCAGGATATATTATGGGTGGAGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGTCTTCTAGATCACTTGAAGAACACAACATCATTCTTGCACTTAAATCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACAATGCATGATGACCAAAAGAATACAGTTACAAGAAACTCTAAAATTGAAAGACAGAATTTGCTTTTATCTGCCACCTTAAACGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTCTTGATGATAAGAAAATAGCACAAATTTCAACAGCTGTAAGCAATGACCATTCAGAATCTGATGGAGATAATGAAGACCAGTATTCCAGTAAAATGCCAACAGTTGGAGATTACAAAGTTCCTGTACAGTTGATTCAGAGATACATGAAAGTGCCTTGCGGTTCACGACTACCTGTACTTCTTTCAATTATAAAGCATCTCTTTGAAAGGGAACCTTCGCAAAAGGTTGTTGTATTCTTTTCAACATGCGATGCAGTAGATTTTCACTATTCACTGTTGAGTGAATTTCAATTTTCATCCTATTCACAAGCAGAAGGGACCCGACAGAAGTTTCTTGGATGCAAAATTTTTCGGTTACATGGTAATATGGTGCAGGAGGACCGGAGAACCAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCTAGTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGAGAAGCTACGGAATATGTTCATAGGGTTGGTAGAACTGCCCGACTGGGTGAAAAAGGAGAGTCGTTGCTATTTCTGCAACCAGTTGAGATAGACTATTTACAGGACTTGGAAAAACATGGTGTCTCACTCACAGAGTATCCTATCCTCAAAGTGTTGGATAGTTTTCCACTATATGGACAAAAGAACTACACAAAGAAATCAGTGTTCTTAGATTCACATCCCTGGGTCCTTTGTCTCCAGAAAGCACTTGAAGCTTTCATCATGTCGAAGGCCGAGGTAGATAAACTTGCTAAGAAAGCATTTTGCTCTTGGGTTCGTGCATACACAGCACATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAGCAACCTTCTTTAGTTGGACAGTCATTCCAAAAGCAAGCTAAGAAGAGAAAGAGATTTGAGAGGAAAACTGGGGTGTCAAAAAAGAGAAAAGTTGGGAGTGTGACAGAACGCAGACCATGA 1554 0.3983 MLQRARGRLLRISLRLFISCRVTKIGFSALMEHLVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHLNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTMHDDQKNTVTRNSKIERQNLLLSATLNEKVNHLAKISLDNPVMVGLDDKKIAQISTAVSNDHSESDGDNEDQYSSKMPTVGDYKVPVQLIQRYMKVPCGSRLPVLLSIIKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYSQAEGTRQKFLGCKIFRLHGNMVQEDRRTSFQTFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPILKVLDSFPLYGQKNYTKKSVFLDSHPWVLCLQKALEAFIMSKAEVDKLAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAKKRKRFERKTGVSKKRKVGSVTERRP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00032 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 172 IPR014001 -
Vium3380g00032 517 Pfam Domain of unknown function (DUF4217) 421 481 IPR025313 -
Vium3380g00032 517 CDD SF2_C_DEAD 217 366 - -
Vium3380g00032 517 Gene3D - 29 175 IPR027417 -
Vium3380g00032 517 SMART helicmild6 275 357 IPR001650 -
Vium3380g00032 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 378 IPR027417 -
Vium3380g00032 517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 232 404 IPR001650 -
Vium3380g00032 517 PANTHER RNA HELICASE 35 485 - -
Vium3380g00032 517 SMART ultradead3 5 182 IPR014001 -
Vium3380g00032 517 SMART DUF4217_3 419 484 IPR025313 -
Vium3380g00032 517 MobiDBLite consensus disorder prediction 483 517 - -
Vium3380g00032 517 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 100 108 IPR000629 -
Vium3380g00032 517 MobiDBLite consensus disorder prediction 185 205 - -
Vium3380g00032 517 MobiDBLite consensus disorder prediction 489 503 - -
Vium3380g00032 517 Gene3D - 227 509 IPR027417 -
Vium3380g00032 517 Pfam Helicase conserved C-terminal domain 235 357 IPR001650 -
Vium3380g00032 517 Pfam DEAD/DEAH box helicase 35 160 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00032 Vium-Chr3380 236126 242282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00032 34 366 Eukaryotic Initiation Factors Gene Family AT5G11170 26.393 1.91e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00032 K14806 - gmx:100805157 848.58