Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00031 ATGGGGGTGAAGAAGCTTAGTCAGGGAGTGAAAAACGAGGGTAATGGCAGCAACGACAACGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTTGATTCCAATTTGTGTGAACAACTTCATGAGAGGTTGGGGTTCGAAGTTCCGACGCTGGTACAAGCTCAAGCGATTCCTGTTATTCTCTCTGGGCGTCATGCACTGGTGAATGCTGCAACGGGCACGGGGAAGACTGCTGCGTATCTCGCTCCGATTGTTCATCTCTTGCAGGGTTACGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCATTGGATTGTTCCAGGATATATTATGGGTGGAGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGTCTTCTAGATCACTTGAAGAACACAACATCATTCTTGCACTTAAATCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACAATGCATGATGACCAAAAGAATACAGTTACAAGAAACTCTAAAATTGAAAGACAGAATTTGCTTTTATCTGCCACCTTAAACGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTCTTGATGATAAGAAAATAGCACAAATTTCAACAGCTGTAAGCAATGACCATTCAGAATCTGATGGAGATAATGAAGACCAGTATTCCAGTAAAATGCCAACAGTTGGAGATTACAAAGTTCCTGTACAGTTGATTCAGAGATACATGAAAGTGCCTTGCGGTTCACGACTACCTGTACTTCTTTCAATTATAAAGCATCTCTTTGAAAGGGAACCTTCGCAAAAGGTTGTTGTATTCTTTTCAACATGCGATGCAGTAGATTTTCACTATTCACTGTTGAGTGAATTTCAATTTTCATCCTATTCACAAGCAGAAGGGACCCGACAGAAGTTTCTTGGATGCAAAATTTTTCGGTTACATGGTAATATGGTGCAGGAGGACCGGAGAACCAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCTAGTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGAGAAGCTACGGAATATGTTCATAGGGTTGGTAGAACTGCCCGACTGGGTGAAAAAGGAGAGTCGTTGCTATTTCTGCAACCAGTTGAGATAGACTATTTACAGGACTTGGAAAAACATGGTGTCTCACTCACAGAGTATCCTATCCTCAAAGTGTTGGATAGTTTTCCACTATATGGACAAAAGAACTACACAAAGAAATCAGTGTTCTTAGATTCACATCCCTGGGTCCTTTGTCTCCAGAAAGCACTTGAAGCTTTCATCATGTCGAAGGCCGAGGTAGATAAACTTGCTAAGAAAGCATTTTGCTCTTGGGTTCGTGCATACACAGCACATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAGCAACCTTCTTTAGTTGGACAGTCATTCCAAAAGCAAGCTAAGAAGAGAAAGAGATTTGAGAGGAAAACTGGGGTGTCAAAAAAGAGAAAAGTTGGGAGTGTGACAGAACGCAGACCATGA 1797 0.4118 MGVKKLSQGVKNEGNGSNDNVFASCSFSSLGLDSNLCEQLHERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTAAYLAPIVHLLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHLNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTMHDDQKNTVTRNSKIERQNLLLSATLNEKVNHLAKISLDNPVMVGLDDKKIAQISTAVSNDHSESDGDNEDQYSSKMPTVGDYKVPVQLIQRYMKVPCGSRLPVLLSIIKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYSQAEGTRQKFLGCKIFRLHGNMVQEDRRTSFQTFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPILKVLDSFPLYGQKNYTKKSVFLDSHPWVLCLQKALEAFIMSKAEVDKLAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAKKRKRFERKTGVSKKRKVGSVTERRP 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00031 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 485 IPR001650 -
Vium3380g00031 598 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Vium3380g00031 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 253 IPR027417 -
Vium3380g00031 598 CDD SF2_C_DEAD 298 447 - -
Vium3380g00031 598 SMART DUF4217_3 500 565 IPR025313 -
Vium3380g00031 598 SMART helicmild6 356 438 IPR001650 -
Vium3380g00031 598 CDD DEADc_DDX31 36 254 - -
Vium3380g00031 598 SMART ultradead3 45 263 IPR014001 -
Vium3380g00031 598 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Vium3380g00031 598 MobiDBLite consensus disorder prediction 564 598 - -
Vium3380g00031 598 Pfam Domain of unknown function (DUF4217) 502 562 IPR025313 -
Vium3380g00031 598 MobiDBLite consensus disorder prediction 570 584 - -
Vium3380g00031 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 486 IPR027417 -
Vium3380g00031 598 MobiDBLite consensus disorder prediction 266 286 - -
Vium3380g00031 598 Gene3D - 3 256 IPR027417 -
Vium3380g00031 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Vium3380g00031 598 PANTHER RNA HELICASE 24 566 - -
Vium3380g00031 598 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
Vium3380g00031 598 Gene3D - 308 590 IPR027417 -
Vium3380g00031 598 Pfam DEAD/DEAH box helicase 51 241 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00031 Vium-Chr3380 236019 242282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00031 17 470 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 1.28e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00031 K14806 - gmx:100805157 1054.28