Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00028 ATGGAATCTAAGTCCATGGCACTGCAATTTCTTCTCCTTCTGCTCTCTCTACTCGCTGTTGCTGCTCATGGACTCGCTTCCAATGCTACACTGAACGAGACTTGTGGATACTTCGATGGTTCTCTCAGTAGAGATACAAAAGTACCTTGCCCTATTGGTTGGGTTATGGACCCTAACAAGACCAAATGCTTTCTTCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAAATCTGTTGTAGTAAGTATGGTGGACATTTAGCTTCATTGACATCACTTCAGGAGCTACAATTTGCTCAGAGCCTGTGTGGTGAATCTGTGAATAGTTGCTGGATTGGTGGACAAAGACGCAACACTACAACTGGTTATCAGTGGATGTGGTCTGACAATTCACCAGGGAATAACTCCATATTTCCATTGGAAAATGTTCCTCCCCATTGTAATGGAACTGGACTATCCTGTCATGGAAACAATACAGATAATCTGTGCACAGTAATGACTAATAATTCAAACTCTCTCGTGAGTGAGAGATGCGATAATCCTCACTCTTCTCTGTGTATACTTGATATAGATGCAGCGTGTAACCGGATGCACTGCCATAGGGATTATTACCTTATCATCCTCATAGTAGTGAGTGCATTGATACTCTCTACAACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGAAAGAAAAGAAGGCGGTCTAGAAAAATATCTGTTCCAGGAGCTTCTCTTCCATCATGGAAAGTCTTCACCAAAGAGGAGTTAAGGTCAATTACGAAGAATTTCAGTGAAGGTAATCGTCTTGTTGGTGATACCAAGACTGGTGGTACATACAGTGGGGTTTTATCAGATGGTTCAAGGGTTGCAGTTAAGAGATTAAAGAGGACAAGCTTTCAGAGGAAAAAGGAGTTTTATTCTGAAATTAGCAGGGTTGCTAGGCTTCGATATCCCAATCTGGTTGCTGTGATGGGATGCTGCTATGATCATGGTGATCGCTACATTGTTTATGAGTTTGTAGCTAATGGTCCCTTAGATAAATGGCTGCATCACATACCTAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCTACAACGCTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTGGTGCATCGAGATATACGTGCAAGCAATGTACTCCTGGATGAGGAGTTTGGAGCACGCCTGATGGGTGTTGGTCTGTCCAAGATTGTGCCGTACGAAGTAATGCATGAGAGAACTGTCATGGCAGGTGGAACTTACGGATATCTTGCTCCAGAGTTTGTGTATAGAAACGAGTTTACAACAAAGAGTGACGTATATAGTTTTGGCGTCCTACTACTTGAAATAGTAAGTGGACGTAGACCTACACAGGCAGTTGATTCTGTTGGTTGGCAGAGTATCTTTGAGTGGGCAACACCTCTTGTGCAAGTTCATCGCTACCATGAACTCTTGGATCCTCATATAACTTCATCCTCTTCTAGCATTATCCCTGAGGCTAGTACCATCCAAAAGGTGGTTGACCTTGTTTATTCCTGCACGCAGCATGTTCCTTCTATGCGCCCTAGAATGTCTCATGTTGTTCACCAGCTGCAACAAATTGCCCAACCACCTGCAAAGTAA 1662 0.4344 MESKSMALQFLLLLLSLLAVAAHGLASNATLNETCGYFDGSLSRDTKVPCPIGWVMDPNKTKCFLHVGRPQSWNDSEICCSKYGGHLASLTSLQELQFAQSLCGESVNSCWIGGQRRNTTTGYQWMWSDNSPGNNSIFPLENVPPHCNGTGLSCHGNNTDNLCTVMTNNSNSLVSERCDNPHSSLCILDIDAACNRMHCHRDYYLIILIVVSALILSTTLAVVVWLLVYKRGKKRRRSRKISVPGASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLSDGSRVAVKRLKRTSFQRKKEFYSEISRVARLRYPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGARLMGVGLSKIVPYEVMHERTVMAGGTYGYLAPEFVYRNEFTTKSDVYSFGVLLLEIVSGRRPTQAVDSVGWQSIFEWATPLVQVHRYHELLDPHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPAK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00028 553 FunFam C-type lectin receptor-like tyrosine-protein kinase 244 342 - -
Vium3380g00028 553 SUPERFAMILY Protein kinase-like (PK-like) 240 545 IPR011009 -
Vium3380g00028 553 CDD CLECT 62 186 - -
Vium3380g00028 553 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 87 548 - -
Vium3380g00028 553 Pfam Lectin C-type domain 70 186 IPR001304 -
Vium3380g00028 553 ProSitePatterns Tyrosine protein kinases specific active-site signature. 389 401 IPR008266 GO:0004672|GO:0006468
Vium3380g00028 553 SMART tyrkin_6 276 544 IPR020635 GO:0004713|GO:0006468
Vium3380g00028 553 Gene3D - 45 204 IPR016186 -
Vium3380g00028 553 ProSiteProfiles Protein kinase domain profile. 267 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3380g00028 553 ProSiteProfiles C-type lectin domain profile. 59 187 IPR001304 -
Vium3380g00028 553 Pfam Protein tyrosine and serine/threonine kinase 277 544 IPR001245 GO:0004672|GO:0006468
Vium3380g00028 553 SMART CLECT_2 50 187 IPR001304 -
Vium3380g00028 553 Gene3D Transferase(Phosphotransferase) domain 1 343 552 - -
Vium3380g00028 553 SUPERFAMILY C-type lectin-like 44 187 IPR016187 -
Vium3380g00028 553 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 343 553 - -
Vium3380g00028 553 Gene3D Phosphorylase Kinase; domain 1 244 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00028 Vium-Chr3380 227290 232864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00028 80 550 Receptor kinase-like Gene Family AT1G52310 69.439 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Vium3380g00028 PK_Tyr_Ser-Thr 7.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00028 - - vra:106762676 1075.08