Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00027 ATGGACCCTAACAAGACCAAATGCTTTCTTCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAAATCTGTTGTAGTAAGTATGGTGGACATTTAGCTTCATTGACATCACTTCAGGAGCTACAATTTGCTCAGAGCCTGTGTGGTGAATCTGTGAATAGTTGCTGGATTGGTGGACAAAGACGCAACACTACAACTGGTTATCAGTGGATGTGGTCTGACAATTCACCAGGGAATAACTCCATATTTCCATTGGAAAATGTTCCTCCCCATTGTAATGGAACTGGACTATCCTGTCATGGAAACAATACAGATAATCTGTGCACAGTAATGACTAATAATTCAAACTCTCTCGTGAGTGAGAGATGCGATAATCCTCACTCTTCTCTGTGTATACTTGATATAGATGCAGCGTGTAACCGGATGCACTGCCATAGGGATTATTACCTTATCATCCTCATAGTAGTGAGTGCATTGATACTCTCTACAACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGAAAGAAAAGAAGGCGGTCTAGAAAAATATCTGTTCCAGGAGCTTCTCTTCCATCATGGAAAGTCTTCACCAAAGAGGAGTTAAGGTCAATTACGAAGAATTTCAGTGAAGGTAATCGTCTTGTTGGTGATACCAAGACTGGTGGTACATACAGTGGGGTTTTATCAGATGGTTCAAGGGTTGCAGTTAAGAGATTAAAGAGGACAAGCTTTCAGAGGAAAAAGGAGTTTTATTCTGAAATTAGCAGGGTTGCTAGGCTTCGATATCCCAATCTGGTTGCTGTGATGGGATGCTGCTATGATCATGGTGATCGCTACATTGTTTATGAGTTTGTAGCTAATGGTCCCTTAGATAAATGGCTGCATCACATACCTAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCTACAACGCTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTGGTGCATCGAGATATACGTGCAAGCAATGTACTCCTGGATGAGGAGTTTGGAGCACGCCTGATGGGTGTTGGTCTGTCCAAGATTGTGCCGTACGAAGTAATGCATGAGAGAACTGTCATGGCAGGTGGAACTTACGGATATCTTGCTCCAGAGTTTGTGTATAGAAACGAGTTTACAACAAAGAGTGACGTATATAGTTTTGGCGTCCTACTACTTGAAATAGTAAGTGGACGTAGACCTACACAGGCAGTTGATTCTGTTGGTTGGCAGAGTATCTTTGAGTGGGCAACACCTCTTGTGCAAGTTCATCGCTACCATGAACTCTTGGATCCTCATATAACTTCATCCTCTTCTAGCATTATCCCTGAGGCTAGTACCATCCAAAAGGTGGTTGACCTTGTTTATTCCTGCACGCAGCATGTTCCTTCTATGCGCCCTAGAATGTCTCATGTTGTTCACCAGCTGCAACAAATTGCCCAACCACCTGCAAAGTAA 1497 0.4315 MDPNKTKCFLHVGRPQSWNDSEICCSKYGGHLASLTSLQELQFAQSLCGESVNSCWIGGQRRNTTTGYQWMWSDNSPGNNSIFPLENVPPHCNGTGLSCHGNNTDNLCTVMTNNSNSLVSERCDNPHSSLCILDIDAACNRMHCHRDYYLIILIVVSALILSTTLAVVVWLLVYKRGKKRRRSRKISVPGASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLSDGSRVAVKRLKRTSFQRKKEFYSEISRVARLRYPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGARLMGVGLSKIVPYEVMHERTVMAGGTYGYLAPEFVYRNEFTTKSDVYSFGVLLLEIVSGRRPTQAVDSVGWQSIFEWATPLVQVHRYHELLDPHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPAK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00027 498 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 493 - -
Vium3380g00027 498 SMART CLECT_2 1 132 IPR001304 -
Vium3380g00027 498 ProSitePatterns Tyrosine protein kinases specific active-site signature. 334 346 IPR008266 GO:0004672|GO:0006468
Vium3380g00027 498 SUPERFAMILY C-type lectin-like 5 131 IPR016187 -
Vium3380g00027 498 Pfam Protein tyrosine and serine/threonine kinase 222 489 IPR001245 GO:0004672|GO:0006468
Vium3380g00027 498 Gene3D - 1 149 IPR016186 -
Vium3380g00027 498 SMART tyrkin_6 221 489 IPR020635 GO:0004713|GO:0006468
Vium3380g00027 498 ProSiteProfiles C-type lectin domain profile. 4 132 IPR001304 -
Vium3380g00027 498 ProSiteProfiles Protein kinase domain profile. 212 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3380g00027 498 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 288 498 - -
Vium3380g00027 498 Pfam Lectin C-type domain 15 131 IPR001304 -
Vium3380g00027 498 Gene3D Phosphorylase Kinase; domain 1 189 287 - -
Vium3380g00027 498 FunFam C-type lectin receptor-like tyrosine-protein kinase 189 287 - -
Vium3380g00027 498 CDD CLECT 7 131 - -
Vium3380g00027 498 Gene3D Transferase(Phosphotransferase) domain 1 288 497 - -
Vium3380g00027 498 SUPERFAMILY Protein kinase-like (PK-like) 185 490 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00027 Vium-Chr3380 227290 232864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00027 25 495 Receptor kinase-like Gene Family AT1G52310 69.439 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Vium3380g00027 PK_Tyr_Ser-Thr 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00027 - - vra:106762676 986.482