Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium3380g00024 | ATGCAACTCCAAATCTCACTCTCAACGCTTCTACTCTCCTTTTTCTTAACATCTCCCACGCTTTTCACCACCGCAGCACAGGGCAAGCCGCAGGATCTACTCCGATCCTCCTGCGTCCACTCACGCTACCCGCGTCTCTGCCTGCGCACCCTCTCGCACTACCCGGGCCCTGCCAACACGCCCCTGGACATGGCTCGAGCCGCGCTCAGGGTCAGCCTGGCCCACACTCGCCGGACCTCCAAGTTCCTGCACACGCTGTCTAAAGGCGGCGCCGCTGCGATGAGCAAGCGGCAGCGCTCCGCTCTCCGCGACTGCACAGAGCAGATCTCGGACTCCGTGGACCAGCTCCGGCGGAGCCTCGACGAGCTCCAACACCTACGCGCAGAGACGTTCCGCTGGCAAATGAGCAACGCTCAGACGTGGGTGAGCGCCGCCCTCACCGACGGCGACACGTGCCTCGACGGCTTCGCCGGCAATGCCAGGCCCGACGTCAAACGCAGAGTCACCGACGTTGCCAGGGTCACCAGCAATGCTCTGTATATGATAAATCGGCTGGGTCAAAGTAGGAGCGGAAAGTCGAAGCCCAAGCCCAAGCACAGGCCTGATTCTCTCAAAAAATAG | 621 | 0.6167 | MQLQISLSTLLLSFFLTSPTLFTTAAQGKPQDLLRSSCVHSRYPRLCLRTLSHYPGPANTPLDMARAALRVSLAHTRRTSKFLHTLSKGGAAAMSKRQRSALRDCTEQISDSVDQLRRSLDELQHLRAETFRWQMSNAQTWVSAALTDGDTCLDGFAGNARPDVKRRVTDVARVTSNALYMINRLGQSRSGKSKPKPKHRPDSLKK | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium3380g00024 | 206 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 10 | 180 | - | - | |
| Vium3380g00024 | 206 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 30 | 186 | IPR035513 | - | |
| Vium3380g00024 | 206 | SMART | PMEI_2 | 29 | 181 | IPR006501 | GO:0004857 | |
| Vium3380g00024 | 206 | Pfam | Plant invertase/pectin methylesterase inhibitor | 33 | 180 | IPR006501 | GO:0004857 | |
| Vium3380g00024 | 206 | CDD | PMEI-like_3 | 36 | 185 | - | - | |
| Vium3380g00024 | 206 | Coils | Coil | 106 | 126 | - | - | |
| Vium3380g00024 | 206 | NCBIfam | pectinesterase inhibitor domain | 6 | 185 | IPR006501 | GO:0004857 | |
| Vium3380g00024 | 206 | MobiDBLite | consensus disorder prediction | 185 | 206 | - | - | |
| Vium3380g00024 | 206 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 31 | 185 | IPR035513 | - | |
| Vium3380g00024 | 206 | MobiDBLite | consensus disorder prediction | 191 | 206 | - | - | |
| Vium3380g00024 | 206 | FunFam | Pectinesterase inhibitor 3 | 29 | 186 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium3380g00024 | Vium-Chr3380 | 193723 | 194743 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium3380g00024 | 29 | 179 | Carbohydrate Esterase | AT5G53370 | 32.911 | 5.52e-17 | 77.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium3380g00024 | - | - | gmx:100816686 | 328.561 |