Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00021 ATGGATAGCGGAGTAGGCTACAAATTGACAGGGATTAGGCAGATTGTGAGGTTAAAGGAAATGCTGCAGAAGTGGCAGAACGTGACTTTAGGGCAAAAAGCTTCGATTCCCACCATTACTGATAAAGTGCCTAACAATGATGGAAGCGGATTGCCATTGATAAACAAAAGGGTAGTGAATGTTATGAACACTGAATCTGACACAGAAGACAGCTGCCAAAGTCCTGAACCGCTTCCACCACCTGATGTTCCAAAGGGATACTTGGCAGTGTATGTTGGACCTGAGCTAAGGAGGTTCATCATTCCCACCACTTATCTCAGCCACTCTCTCTTCAAAGTTTTGCTGGAAAAGGCTGCAGATGAATTTGGCTTTGATCACAGTGGAGGCCTCACCATCCCTTGTGAGACTGAGACCTTCAAGTACCTACTCAAGTGCATCGAGAATGAAAACAAAGACCAACTCAATCATAAAACTGCACAAGCAGCCGAAAGCTCGGGAACTGTGGAAGAGTAA 513 0.4522 MDSGVGYKLTGIRQIVRLKEMLQKWQNVTLGQKASIPTITDKVPNNDGSGLPLINKRVVNVMNTESDTEDSCQSPEPLPPPDVPKGYLAVYVGPELRRFIIPTTYLSHSLFKVLLEKAADEFGFDHSGGLTIPCETETFKYLLKCIENENKDQLNHKTAQAAESSGTVEE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00021 170 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 67 142 IPR003676 GO:0009733
Vium3380g00021 170 Pfam Auxin responsive protein 78 146 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00021 Vium-Chr3380 169827 171701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00021 1 152 Calmodulin-binding Proteins AT3G43120 66.447 7.03e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00021 K14488 - gmx:100527570 251.521