Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00020 ATGTCCAAAGGAGGAAAACTAACCAAGCTGAAGTCAGTGCTCAAGAAATGGAACTCCTTCAGCAGCAAACAGACCCAAGCCACCATCACCTCCGTAGCCAGCGACGGTGACTCCTCGTCGCTCCGCCCCGTGTACGTTGGGAAGACGCGGCGGCAGTACCTGGTGAGCGCGGAGGTTGTCGGACACCCGCTGTTCCGGGAGCTGGTGGACAGGTCCCGCGACAGCAGCTCGGAGGAGGAGGAGGACAGCATCAACGTGGCGTGCGAGGTTGTTCTGTTCGAACACTTGCTCTGGATGCTCCACAACGCCGATCCTCAACCTGAGTCGCTGGACGAACTCGCCGATTTTTACGCCTGCTGA 360 0.5917 MSKGGKLTKLKSVLKKWNSFSSKQTQATITSVASDGDSSSLRPVYVGKTRRQYLVSAEVVGHPLFRELVDRSRDSSSEEEEDSINVACEVVLFEHLLWMLHNADPQPESLDELADFYAC 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00020 119 Pfam Auxin responsive protein 9 100 IPR003676 GO:0009733
Vium3380g00020 119 PANTHER EXPRESSED PROTEIN 22 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00020 Vium-Chr3380 159700 160312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00020 2 100 Calmodulin-binding Proteins AT4G34750 28.846 2.38e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00020 - - gmx:100806227 189.504