Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00007 ATGTTCAATCCTCAAACCTCGCCACCGCCGCTGCCGGTCATGACTCCGCCGGCAACCCCTCTCAACCATGAAACGACGTCGCACAAGAAAAATCGCAGAACCACCGGAGTTCCCGTTCCCCTTCCTCACTCAGTGGAAGTGATTGACGTTGACGATTCCCCTGCCTCCGCCTTTTTCACGCCCATCTCCTTCCTAGGCACGATCAGGTCAAACGCTGTCTCCGTTGAGCAACGTGACTGTTTTTCCAAATCTGTCCACATCATCGACCTTTCCGACACCGAGGACGACGATGATTTACGTATCCTCAATTTCACTCCCGCAAACACTTCCTTTGGCAAAAGGAAAAAGCTCAGGGGAGAATCCTCCAACGCAGCCCCCTTCGACTGCGAAATCTGTGCTGAAACTAAAACATCCAAGGAAGCCTTCTCCATCAACGGCTGCTGCCACGTGTACTGCAACCAGTGCATCGCGCTCTATGTCGAATCGAAGCTCCAGGACAACGTGGTCAACATAGGCTGCCCTGTGCCGCGGTGCAGGGGGTTATTGGAAGCCGAAGATTGCCGTTCGATTCTCGCGCCTGAGGTTTTGGATCGGTGGGGTAAAGCGCTGTGTGAGGCGGTGATTTCTATGGGGAAGTTCTATTGTCCTTTTCCAGATTGCTCTGTGCTGTTGATTCGCGAGGAGAAGGATGAGGGTATCAAAGAATCGAATTGTCCTAACTGTGGGAGGCTGTTTTGTGCGCTGTGTAGGGTACCCTGGCACGAGGACATGCCCTGTGAGGAGTTTCAGAAACTGAACGCCGAAGAGAGGGGAAGAGAGGATGTGATGCTGAGGAACCTTGCCAAGCAAATGATGTGGAAGAGGTGTCCCGCTTGTGGGTTTTACGTCGCCAAAACCTCTGGCTGTATGTACATGAAATGCAGGTGTGGGAGTGCCTTCTGTTACAACTGTGGGATTCCTAACTCATCTAATCTCCATTATTGCTCCTCCTGTAGAAGATAA 1002 0.52 MFNPQTSPPPLPVMTPPATPLNHETTSHKKNRRTTGVPVPLPHSVEVIDVDDSPASAFFTPISFLGTIRSNAVSVEQRDCFSKSVHIIDLSDTEDDDDLRILNFTPANTSFGKRKKLRGESSNAAPFDCEICAETKTSKEAFSINGCCHVYCNQCIALYVESKLQDNVVNIGCPVPRCRGLLEAEDCRSILAPEVLDRWGKALCEAVISMGKFYCPFPDCSVLLIREEKDEGIKESNCPNCGRLFCALCRVPWHEDMPCEEFQKLNAEERGREDVMLRNLAKQMMWKRCPACGFYVAKTSGCMYMKCRCGSAFCYNCGIPNSSNLHYCSSCRR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00007 333 CDD Rcat_RBR_unk 285 321 - -
Vium3380g00007 333 MobiDBLite consensus disorder prediction 1 17 - -
Vium3380g00007 333 SMART ibrneu5 269 331 IPR002867 GO:0008270
Vium3380g00007 333 SMART ibrneu5 197 259 IPR002867 GO:0008270
Vium3380g00007 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 211 IPR013083 -
Vium3380g00007 333 ProSiteProfiles Zinc finger RING-type profile. 129 177 IPR001841 -
Vium3380g00007 333 FunFam RBR-type E3 ubiquitin transferase 261 333 - -
Vium3380g00007 333 Pfam IBR domain, a half RING-finger domain 212 259 IPR002867 GO:0008270
Vium3380g00007 333 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 72 331 IPR031127 GO:0004842|GO:0016567
Vium3380g00007 333 CDD BRcat_RBR_unk 209 262 - -
Vium3380g00007 333 FunFam RBR-type E3 ubiquitin transferase 124 210 - -
Vium3380g00007 333 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Vium3380g00007 333 SUPERFAMILY RING/U-box 207 264 - -
Vium3380g00007 333 SUPERFAMILY RING/U-box 270 332 - -
Vium3380g00007 333 SUPERFAMILY RING/U-box 126 206 - -
Vium3380g00007 333 Gene3D - 213 260 - -
Vium3380g00007 333 Gene3D - 261 333 - -
Vium3380g00007 333 ProSiteProfiles TRIAD supradomain profile. 125 333 IPR044066 -
Vium3380g00007 333 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00007 Vium-Chr3380 70262 72734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00007 129 320 C3H Transcription Factor Family AT2G19610 31.707 8.05e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00007 K11975 - gmx:100803898 444.121