Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00006 ATGATGTTCCATTCTCAGGGTGTGTCAAGACATTGTAGTCTCCTTGCTGTTCTTAGTGGTAAATCACGTGACATTAAACAGAAGCAGAAGCAGAGTGCTGCTTCTGAGGATCATCCTCCTTATCCCTTTCCAGAGCTTGCTTCTTCTGGCAGTCTTGAGGTCAAGTTGTTGATCAAACCTAATACCGATGAACTCGGTCGGGCTCTTGAACAACTGCAACCGGATTTTGTTTACCTGCAAGGTCAGCTGCTAGAAGATAGGGGAGAAATTGGGACCCTTGTATGGGAGGATTTTGACCTGTCTTCCCCAGAAGCATTGTGTGGATTATTTGGTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAGGGAGAGAAATTGGCGGAGGCACTCCGTAATAAGGGAGTTCCATATACTATCTATTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCGTCATTCTTTTTTCTCTGTAGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTGGCATCGTTTAGACTATACTGTATACAAAACAATGTCTTACCTTCTAACAGCCATAAGGGTGCCGGTAAGTTTGGGCCACAAATTTTTGGGGTTCCTCCCAACATTGATACCAGTCAAAGTGTAGCAGACATGAAGGAAGAGGAAGAGGAAAGTTCACCTGAGACTATATCTGCTGTAAAGATATATGATGATGATGTGAACATGAGATTTCTTGTTTGTGGAGTTCCCTGCACATTGGATGCTTGCTTGTTGGGATCATTAGAGGATGGACTCAATGCTCTTCTATTTACAGAAATACGTGGATGCAAACTTCACAACAGGACTAGTGCTCCACCACCACCTCTGCAGGCAGGAACTTTCTCACGTGGTGTAGTGACTATGCGTTGTGATATATCCACATGTAGTACTGCTCATATATCACTTTTGGTTTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAGAAAGAGCTCATTGAGAAGAGTCAACTTGTTCAGGCATTTCCTAATCATGAACAAAGTAAATCACCTTCCTTAGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCATCCAATGTGTCATACCGCAGCCTTGTTATGTTGGGAATTGCTAGCATTCAGGGATTGCCAGTTGCATCTTTTAATAAAGATGATGCTGAGCGTCTCCTTTTTTTTTGTACTAAGCAGGAGAAAGAAAACTGTCGTAACGAGCAAGTTTTCTCTGCGATTCCAAGTTGGCTGAAGCCTCCACCGCCCAGTCGAAAAAGATCTGAACCATGCTCTAGTTCAAAGTCTATCAATCCTAGTGGCCGGGGAATTGAAGATCTTGGTAGTCATAGACAGAAATTAAATCTTGCTGCTATGAGGCCAATCCCTCAATCTCATAGACACAAGATTCTCCCTTTTTCTGGATTGTCTGGGGGTGCAAGATATGACGGAGACCATGGAAAGTCAAATCAGCCGCTTGCTCCTATTAAGCATAATGTTTCAGGCCCTACTTCAGTTACAAACAGGAAATCTGTGTCGAACTCATTTCAAGCTAACCAGATTATTTCTTTGAACCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGACTTCCTGAGGGATGTAATGCAGTTTTTGATCCTTCGGGGGCATAATCGTCTAATTCCACCAGGTGGACTTGCCGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTTGACCTGTTCAACTTGTACAGGGAGGTGGTTTCAAGAGGAGGTTTTCATGTTGGAAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACTGGGGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTCTTAGAATATGAATTAGCTCATGACGATGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGTGCAGCAGGTGATTGGGTGAACTGTGGCGTATGTGGTGAGTGGGCTCATTTTGGCTGTGATCGGCGGCAGGGACTAGGAGCATTTAAGGACTATGCAAAAACCGATGGACTGGAATACGTTTGTCCACGCTGCAGTGCATTAAAGTTCAGTAAAAAATCTCAAAAAACTGCAAATGGTTATTAA 2262 0.431 MMFHSQGVSRHCSLLAVLSGKSRDIKQKQKQSAASEDHPPYPFPELASSGSLEVKLLIKPNTDELGRALEQLQPDFVYLQGQLLEDRGEIGTLVWEDFDLSSPEALCGLFGSKLPNTVYLETPKGEKLAEALRNKGVPYTIYWKNDFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSHKGAGKFGPQIFGVPPNIDTSQSVADMKEEEEESSPETISAVKIYDDDVNMRFLVCGVPCTLDACLLGSLEDGLNALLFTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSTAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAFPNHEQSKSPSLEPRRSASVACGSSVFEVCMRVPAWASQVLRQLASNVSYRSLVMLGIASIQGLPVASFNKDDAERLLFFCTKQEKENCRNEQVFSAIPSWLKPPPPSRKRSEPCSSSKSINPSGRGIEDLGSHRQKLNLAAMRPIPQSHRHKILPFSGLSGGARYDGDHGKSNQPLAPIKHNVSGPTSVTNRKSVSNSFQANQIISLNPLPMKKHGCDRAPIRVCSEEDFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00006 753 MobiDBLite consensus disorder prediction 451 482 - -
Vium3380g00006 753 MobiDBLite consensus disorder prediction 524 545 - -
Vium3380g00006 753 Gene3D - 574 679 IPR036431 GO:0003677
Vium3380g00006 753 SMART ARID_2 573 676 - -
Vium3380g00006 753 Pfam ARID/BRIGHT DNA binding domain 579 676 IPR001606 GO:0003677
Vium3380g00006 753 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 753 IPR042293 -
Vium3380g00006 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 743 IPR013083 -
Vium3380g00006 753 ProSiteProfiles ARID domain profile. 576 680 IPR001606 GO:0003677
Vium3380g00006 753 SUPERFAMILY ARID-like 577 691 IPR036431 GO:0003677
Vium3380g00006 753 CDD PHD_ARID4_like 686 737 - -
Vium3380g00006 753 MobiDBLite consensus disorder prediction 529 545 - -
Vium3380g00006 753 CDD ARID 578 676 - -
Vium3380g00006 753 SUPERFAMILY FYVE/PHD zinc finger 679 742 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00006 Vium-Chr3380 58574 66292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00006 2 752 ARID Transcription Factor Family AT3G43240 65.517 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium3380g00006 ARID 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00006 - - gmx:100808357 1411.36