Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00005 ATGGCTTCTTCCAATTCCGTTTCTTCTCTTAACGTCGTCGGATACACACACACTACTTCTCCACCAAACAACCACCTATCATCGCCATCACACATCACTCTCCTCGCGCTAACGCTCGTCAACCTCGCCGTTACCGTTTCGCTGGCTGTTTATTTCCTTCTCCGTTACCGTAACCGTTTCCTCCGTCGTATCTCTCCCTCATCCGCTTCATTATTCTCGTCCGGGAATCCGATATCGTCGGACACCGCTTCGCCTTCCATCCTCGGCTCTCTACCGGCGTTCTCCTTCTCCTCCGTGACGAGACGCTCCGCCTCATCCGGTGGCGGCGAGGACTGCGCTGTGTGCTTATCGAAGTTCGAGCAACACGACCTTCTCCGTTTGTTACCTCTATGCTGCCACGCTTTCCACGCTGAATGCATCGACACGTGGCTCCAATCGAACCTCACGTGTCCGCTCTGCCGATCCGCCGTCAGCGCGTCGGAGTCTGACCTCGCCAAGGTCTTCCGCTCGTCGTCCGTCGCCGGCGGCGAGAGCTTTCGGCTTGAGATAGGGAACATCAGCAGCAGCGACCGCCGTGGAGCGGCGGCCGACGAGGAAACGCGCGTGAGGTCCTATTCCGTTGGTGCGTTCGAGTATTTAATCGACGAGGAGGCTGCGGCTGAGGTTGAGATTGAGGTTGCGTTCGGTTATGCTATCCAGAGAAGCGTTTCTGGCGAGAAACATGACGGCGCTACGGTGGAGGCTGCGGCAGATTCTCTGCCGAGCTTGGCTGCTGAGGTAGGGCGTGGAGGAAGTAACAATAGTAGTGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGAAGTTCTGGAAGGTTCTTCACTGGGAGTAGTCGCCGAAGCGACGTCGTTGAGGGTGGAGATTACGATGCTGAAGCCAACCGTTTGGGGGATGAAATTGGTGAAATGTTTCGATGGCTCTCGGCGGTTTGA 987 0.5593 MASSNSVSSLNVVGYTHTTSPPNNHLSSPSHITLLALTLVNLAVTVSLAVYFLLRYRNRFLRRISPSSASLFSSGNPISSDTASPSILGSLPAFSFSSVTRRSASSGGGEDCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSAVSASESDLAKVFRSSSVAGGESFRLEIGNISSSDRRGAAADEETRVRSYSVGAFEYLIDEEAAAEVEIEVAFGYAIQRSVSGEKHDGATVEAAADSLPSLAAEVGRGGSNNSSGWLKDYVDRLSNTMSFRSSGRFFTGSSRRSDVVEGGDYDAEANRLGDEIGEMFRWLSAV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00005 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 160 IPR013083 -
Vium3380g00005 328 Pfam Ring finger domain 111 154 IPR001841 -
Vium3380g00005 328 SUPERFAMILY RING/U-box 107 159 - -
Vium3380g00005 328 FunFam E3 ubiquitin-protein ligase ATL6 77 160 - -
Vium3380g00005 328 SMART ring_2 112 153 IPR001841 -
Vium3380g00005 328 CDD RING-H2_EL5-like 111 154 - -
Vium3380g00005 328 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Vium3380g00005 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 31 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00005 Vium-Chr3380 49610 51061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00005 10 154 C3H Transcription Factor Family AT2G34990 35.762 4.26e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00005 K10663 - gmx:100804962 390.193