Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3380g00001 ATGGATAAAATTAGCCATTGTTGTCCTTTTCTTCATCTGAGAGTGAGAACACAGCAATTTGTGGTAACCCTTTCAGTATTAGGCAGTGCACTGTCGTGGATCACCACTTCTGATGCTCAGAATCAGTGCAGTCTTACTAGATATCCCGATCTATGTGCTCAAACCTTGATGCAATTTGGTTCATCTAATCAAAGTGTTCATCATAACATTTTGGCTCTTGTCAACAAAACCATTTTAGAAACTAACTTGCCAAGTTCATATTTTGCTGAATACAAGACTGATGATGAAGATGGAGCCCATTCTGTCGTCGCAGATTACTGTGAAGAGCTTATCGGCATGTCATTGAAAAGGTTAGATCAATCCCTGAGAGCACTGAAATACCCTACAAGAAACAACAATGACATTCAAACATGGCTAAGTGCTTCCATAACTTTCCAACAAACTTGTAAAGACTATGCAGATGCACACACCACAATCTCTCCAGGAGGCCTTATGCAAAGAATGTCAGACAAAATGCACTATCTTTCTCAACTGGGAAGCAACTCATTAGCACTTGTTAACCATGTGAGCAAAAAAGGTAGCCAGAAAGATGAAACTAACAAAGAGGAACATGAATTTCCCAAGTGGGTATCAGCCAAAGGACGTAAGCTGCTTCAAGGAGGCACCATAAAAGCAAATGCCATAGTTGCACAAGATGGTTCAGGAGATTACAAGACAGTTTCTGAAGCCATTAAGGCAGCTTCAGGGAACAGGTTTGTGATTTATGTGAAGGAAGGGGTTTACAAAGAGAAGATTCGCACCAGCAAGGATGGAATCACCTTAATTGGAGATGGAAAATCCTCTACTCTTATTGTTGGAGATGACAATGTTGCCGAGGGTTCTTCCTTAACCGACTCAGCCACGTTTACAATCACCGGCGATGGCTTTATGGCACGCGACATCGGATTCCAGAACAACGCTGGCCCAGGAGGCGAACAAGCGGTGGCTCTGAGCATAGCCTCCGACCATGCCGTCCTCTACCGGTGCAGCATATCAGGGTACCAAGACACCCTCTACGCCCTCGCCCTCCGCCAGTTCTACGCAGAATGCGACATTTACGGCACGATCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAGCGCTGCAACCTCCTCCTCCGCCGCCCTCGCGGCTCCAGCTACAACGCCATTCTGGCCAACGGCCGAACTGACCCCGGCCAGAACACCGGGTTCTCCGTTCACAAGTGCAGCATATTGCCGACCTCGGACTTTACGCAGTCGCGCAGTTCGTTTCTGGGGAGGCCCTGGAAGGAGTATTCGAGATCGGTGGTGATGCAGAGTACAATCGACGATGTGATTGCGGCGAAAGGGTGGGTGGCGTGGCCTGGGTACGGAAGCTCCGTGTTGAAGAGTTTGTATTTCGCGGAGTATGGCAATGAAGGAGGTGGTGCCGGAACCGCAGGGAGGGTGCAGTGGCAGGGTTTTCATGTTCTTAAGGCTGAGGATGCTGCCAAATTCAGTGTTGCTAATTTTATTGCTGGAAACTCGTGGATTCCCTCCAGTGGAGTTAATTTCATTTCAGGGCTTAATTAA 1596 0.4787 MDKISHCCPFLHLRVRTQQFVVTLSVLGSALSWITTSDAQNQCSLTRYPDLCAQTLMQFGSSNQSVHHNILALVNKTILETNLPSSYFAEYKTDDEDGAHSVVADYCEELIGMSLKRLDQSLRALKYPTRNNNDIQTWLSASITFQQTCKDYADAHTTISPGGLMQRMSDKMHYLSQLGSNSLALVNHVSKKGSQKDETNKEEHEFPKWVSAKGRKLLQGGTIKANAIVAQDGSGDYKTVSEAIKAASGNRFVIYVKEGVYKEKIRTSKDGITLIGDGKSSTLIVGDDNVAEGSSLTDSATFTITGDGFMARDIGFQNNAGPGGEQAVALSIASDHAVLYRCSISGYQDTLYALALRQFYAECDIYGTIDFIFGNAAAVFQRCNLLLRRPRGSSYNAILANGRTDPGQNTGFSVHKCSILPTSDFTQSRSSFLGRPWKEYSRSVVMQSTIDDVIAAKGWVAWPGYGSSVLKSLYFAEYGNEGGGAGTAGRVQWQGFHVLKAEDAAKFSVANFIAGNSWIPSSGVNFISGLN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3380g00001 531 Pfam Pectinesterase 226 516 IPR000070 GO:0030599|GO:0042545
Vium3380g00001 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 190 IPR035513 -
Vium3380g00001 531 FunFam Pectinesterase 36 190 - -
Vium3380g00001 531 SMART PMEI_2 34 185 IPR006501 GO:0004857
Vium3380g00001 531 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Vium3380g00001 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 191 IPR035513 -
Vium3380g00001 531 PANTHER PECTINESTERASE 31 520 - -
Vium3380g00001 531 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
Vium3380g00001 531 NCBIfam pectinesterase inhibitor domain 22 188 IPR006501 GO:0004857
Vium3380g00001 531 CDD PMEI-like_3 43 191 - -
Vium3380g00001 531 SUPERFAMILY Pectin lyase-like 223 529 IPR011050 -
Vium3380g00001 531 Gene3D - 220 530 IPR012334 -
Vium3380g00001 531 FunFam Pectinesterase 221 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3380g00001 Vium-Chr3380 13955 17207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3380g00001 10 530 Carbohydrate Esterase AT2G45220 40.943 2.89e-123 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3380g00001 K01051 - gmx:100795439 766.533