Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3377g00015 ATGGCACCCAGTTTTGACTGTGTTTCGAGTCTCCTTTGCTCAGAGGACAGCACCGTTTTCGACGAGAGTCATTATGGGGGTACGATGATGGGGGGGTGCGAGGACACGTGGAGTTCCCGGAGGCACCGCTTCGATGAACCGGATGAGTTGCCATTGCTGAGTGATGAGTGCTTGGCGATGATGGTGGAAAGAGAGTGCCAACTCTGGCCTGGTTTGCGTTACTTCAATAGGCTTCAGACTGGAATTTTGGACTGTGGTGCCAGAAAGGAGGCCATTGATTGGATTCACAAGGTCCGATCGCATTTCGGTTTTGGTCCTCTCTGTGGATATCTATCTATAAATTACTTGGATCGATTCCTTTCTGCGTATGAATTACCAAAGGGAAGAGTTTGGACAATGCAATTGTTGGCTGTGGCGTGTTTAACTCTTGCAGCCAAAGTGGATGAGACAGAAGTCCCAGTGTCTCTTGATTTACAGGTGGGTGAATCAAAGTTTGTATTTGAGGCTAAGACCATCCAGAGAATGGAGCTTCTAGTACTAAGCACATTGAAGTGGAGAATGCAAGCAATCACTCCTTTCACCTTCCTTGATTACTTCCTTTGCAAGATCAATGGTGATCAGAGTCCATTGAAGTCTGCAATCATGCGATCTATCCAACTAATATCAAGCACTGCAATAGGAATTGACTTCTTGGAATTCAAACCATCAGAGATTGCTGCAGCAGTGGCCATGAATGTCATGGAGGAAACCCAAACTGTTGATACAGGGAAAGCAATTTCTGTGCTGATTCAACACGTAGAAAAGGAGAGACTATTGAAGTGCATTAAAATGATGCAAGAGTTGTCATCAAACAGTGGGTGTGCGAAGGATTCAAGTGGTTCTGTGACTTGCCTACCACAAAGTCCAATAGGTGTGCTAGATGCTTTGTGCTTCAGCCACAAAAGTGATGACACAAATGCTGCTTCATGTGCTAACTCTTCACATAGTACTCCTGATGCTAAAAGGAGGAAGTTAAACAAAACCTGTGGAGCAGAGCTATTGTAG 1044 0.4511 MAPSFDCVSSLLCSEDSTVFDESHYGGTMMGGCEDTWSSRRHRFDEPDELPLLSDECLAMMVERECQLWPGLRYFNRLQTGILDCGARKEAIDWIHKVRSHFGFGPLCGYLSINYLDRFLSAYELPKGRVWTMQLLAVACLTLAAKVDETEVPVSLDLQVGESKFVFEAKTIQRMELLVLSTLKWRMQAITPFTFLDYFLCKINGDQSPLKSAIMRSIQLISSTAIGIDFLEFKPSEIAAAVAMNVMEETQTVDTGKAISVLIQHVEKERLLKCIKMMQELSSNSGCAKDSSGSVTCLPQSPIGVLDALCFSHKSDDTNAASCANSSHSTPDAKRRKLNKTCGAELL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3377g00015 347 FunFam D2/4-type cyclin 71 183 - -
Vium3377g00015 347 FunFam D6-type cyclin 184 276 - -
Vium3377g00015 347 SUPERFAMILY Cyclin-like 45 187 IPR036915 -
Vium3377g00015 347 SMART Cyclin_C_2 190 300 IPR004367 -
Vium3377g00015 347 Gene3D - 59 277 - -
Vium3377g00015 347 Gene3D - 71 188 - -
Vium3377g00015 347 Pfam Cyclin, N-terminal domain 57 187 IPR006671 -
Vium3377g00015 347 Pfam Cyclin, C-terminal domain 190 286 IPR004367 -
Vium3377g00015 347 CDD CYCLIN_AtCycD-like_rpt2 190 278 - -
Vium3377g00015 347 CDD CYCLIN_AtCycD-like_rpt1 87 185 - -
Vium3377g00015 347 SUPERFAMILY Cyclin-like 172 281 IPR036915 -
Vium3377g00015 347 PANTHER CYCLINS 55 283 IPR039361 -
Vium3377g00015 347 SMART cyclin_7 93 181 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3377g00015 Vium-Chr3377 98634 101346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3377g00015 61 323 Core Cell Cycle Gene Families AT2G22490 48.708 7.89e-80 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3377g00015 K18810 - gmx:547739 583.563