Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3376g00001 ATGTCCAAAAACAAAGGGAAGAAGAAGAAAAAGAGCGAAAGCGACGAAGACGACGACGTTTTCTACTACCGCTATAGCAGCGTAAACCCTAACCCTACTCAACACAATCCCAATTCAAATCCAAATCCCAATTCAAATCCCAAAACCAATAACAAAGGATCCTCGTCGTTGGCACCGTCCAAATCAACGTTGTACGTTTCAAACCTCGATTACTCCCTAACCAATTCCGATCTCCACACGCTCTTCTCCAAATTTGGCCGAATCGCGCGCGTCACGGTCCTCAAGGACCGCCACACGCGCCTAAGCCGCGGCGTCGCATTCATCCAGTTCGTTTCCCCCGACGACGCGCGCAACGCCGCCGCGCAGACGCACCGGATGGTCCTCAAAGATCGCACCCTCACCGCCTCTATCGCCGCCGACAACGGCCGCGCGCCCGAGTTCATCCGCAAGCGCGTCTACCGCGACACTGCCCGCTGCTTCGAGTGCGGCGCCGACGGGCACCTCTCCTACGATTGCCCGCGGAATCATTTAGGCCCCCGCCAGCGCCCCGAGCCCAAACGCCCCCGTCGTGTGCCCCACCACCGCGATGATGACAACAACGACGGCGGGGAGGATTCTGACGGTGGCGGAGCCGGTGCCCGGTTCGAAGATGATAATTGGGCGTCCGTCGTGGATGACGGCGCCGATGAGAGGCTATTGACGGGAAAGCGTGACGACGATGCTGTGGCTGCGAAGAGTAAGAAGAAGAAGAAAGCCGGGTACTTCAGTGATGAGAGTGATGATGATGACTTTGATGGTTGA 801 0.5743 MSKNKGKKKKKSESDEDDDVFYYRYSSVNPNPTQHNPNSNPNPNSNPKTNNKGSSSLAPSKSTLYVSNLDYSLTNSDLHTLFSKFGRIARVTVLKDRHTRLSRGVAFIQFVSPDDARNAAAQTHRMVLKDRTLTASIAADNGRAPEFIRKRVYRDTARCFECGADGHLSYDCPRNHLGPRQRPEPKRPRRVPHHRDDDNNDGGEDSDGGGAGARFEDDNWASVVDDGADERLLTGKRDDDAVAAKSKKKKKAGYFSDESDDDDFDG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3376g00001 266 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Vium3376g00001 266 SMART rrm2_1 63 136 IPR003954 GO:0003676
Vium3376g00001 266 MobiDBLite consensus disorder prediction 1 59 - -
Vium3376g00001 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Vium3376g00001 266 ProSiteProfiles Zinc finger CCHC-type profile. 158 174 IPR001878 GO:0003676|GO:0008270
Vium3376g00001 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Vium3376g00001 266 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 263 IPR044598 GO:0000398|GO:0005689
Vium3376g00001 266 MobiDBLite consensus disorder prediction 219 257 - -
Vium3376g00001 266 MobiDBLite consensus disorder prediction 177 201 - -
Vium3376g00001 266 MobiDBLite consensus disorder prediction 26 59 - -
Vium3376g00001 266 Gene3D - 1 146 IPR012677 -
Vium3376g00001 266 SMART rrm1_1 63 136 IPR000504 GO:0003723
Vium3376g00001 266 MobiDBLite consensus disorder prediction 8 22 - -
Vium3376g00001 266 Gene3D - 149 192 - -
Vium3376g00001 266 MobiDBLite consensus disorder prediction 171 266 - -
Vium3376g00001 266 SUPERFAMILY RNA-binding domain, RBD 35 145 IPR035979 GO:0003676
Vium3376g00001 266 SUPERFAMILY Retrovirus zinc finger-like domains 142 175 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3376g00001 Vium-Chr3376 1926 3061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3376g00001 62 151 Eukaryotic Initiation Factors Gene Family AT3G16380 31.111 6.11e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3376g00001 K13154 - gmx:100814914 285.804