Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3370g00004 ATGTTCTTTGTTTGGTTCATACTGTGTTGTTATGCTTTGGATATTGGCACTGCCACAGACACTATCAACTCATCTCAGTTCATCAAGGACAATGAAACTATAACCTCCGCTGGTGGCAACTTCACCTTGGGGTTCTTCACCCCTCAAAATTCTACCAATCGTTATGTGGGAATTTGGTGGCAAACCAAATCCACTGTCATATGGGTGGCTAACAGGAACCAACCACTGAATGATTCTTCTGGAGTTGTTACCATATCTGAAGATGGCAATCTTGTGGTGTTGAATGGTCAGAATCAAGTGATTTGGTCAACTAATGTGTCCACAACATCATCCAATACAAGTGCCCAGCTTTCAGATTCTGGTAAGCTAGTTCTGGCTGAAACCACAAGGGGAACATTGTGGGACAGTTTTCAGCAACCTTCAAATACGTTAATGCCCGGAATGAAAACTTTAACCAATGCACAAACAGGTAGGAAAGTAGAACTTACAGCATGGAAAAGCCCTTCTAATCCCTCCGTTGGGAGCTTCTCTGCTAGTGTTCTTCGACGCATAAATATACTTGAAGCGTTCATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCATGGAATGGTGCGATCTTTACAGGGATACCCATGTCATCGTTTCTTTATTCTTTCAAAGCTGGGGATGATGAGGAAGGAAATACATATTTCTATTACACAATACCAAGTCCGCTAAAGATTTTTATCTATGTGTTAAATTCGCGAGGCCAATATGAAGAACTATCGTGGAATGATAAGAAGGAAGAAATGGAAATTTCGTGGACTAGTCATGAATCGGATTGTGATGTTTATGGAATATGTGGGCCATTCTCTATTTGTAATGCAACAAACTCACCAATTTGCAGTTGTTTGAAAGGGTTTGAGCCGATGAACAAAAAAGAATGGAATAGACAAAACTGGTCAAGTGGATGTGTTAGAAGCACACCTTTGCGTTGCGAAAGGGTCAATCAAAACGTAAGTGCAAAGGAAGATGGCTTTTCGCAACTGCAAATGGTTAAAGTTCCTGATTTTCCAGAAGGGTCTCCTGTTGACACTGAATGCAGAAGCCAATGCTTGGAGAATTGCTCTTGTGTTGCATATTCTTATGATATTGGAATTGGTTGCATGTCTTGGACTGGGAATCTCGTAGACATACAACAATTCTCAGAGGGAGGACTTGAGTTATATGTTCGTGTAGCCGATTCTGATCTTGAATCTGATCTTGAACATGATAAAGGGACACACACAGCAATCATCGTTGGAGTTACAGTGACAGTAGTAACAGTCATCATAGTTACTTGTGCGTATGTCATGTGGAGGACTTCCAATCACCCAGCTAAAATATGGCACTCAATCAGATCAGCAAGGAATAGGAACATCAATGATTTCCAACGATTGAAAAAAGTTGAAACACTAGAACATCCAAGCCACAAAGTAATTGAAGAACTGTCACAAGTTAAACTCCAGGAGCTGTTACTGTTTGATTTTGAAAGGCTTGCAACAGCCACAAACAACTTCCACCTGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTGTACAAGGGGAAACTGCAAGATGGTAAGGAAGTAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCAAGAAGAATTCATGAATGAAGTAGTGGTCATTTCCAAGCTTCAACACCGTAATCTTGTAAGACTTTTTGGCTGTTGCATTGAAGGTGACGAAAAGATGTTGATCTATGAATACTTGCCAAATAAAAGCTTGGATGTATTAATCTTTGATCCATCAAAAAGTAAACTCCTAGATTGGAGGAAGCGCTGTGGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCACAGGGACTCCAGACTAAGAATCATACATAGAGATTTGAAGACAAGTAATATCTTGTTAGATGAAGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGAGTGAAGATCAGGCCAATACTAACAGAGTTGTTGGAACATATGGCTATATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGGCACTAGAGATTCTAAGTGGAAGAAGAAATTCAAGCTTTTATGATGATGAACATGTTCTTAGCCTCTTGGGATTTGCTTGGATACAATGGAAGGAAGACAACATATCTTCTTTAATAGATCCAGAAGTATATGATCCTAGTCACCATAAAGATATTTTAAGGTGCATTCACATAGCTCTTCTGTGTGTACAAGAACTTGCTATAGACCGACCCTCTATGGCTGCAGTAATTTCTATGCTTAACAGTGAGGTTGCGTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCTTGAGGCAAAATCTGCTGAATTCGGAGTCATCTAAAGGAAGTCATAGATTTTCCTCCACCAACACTGCTAGCATTACAACTATCTCTGGAAGATAG 2502 0.4033 MFFVWFILCCYALDIGTATDTINSSQFIKDNETITSAGGNFTLGFFTPQNSTNRYVGIWWQTKSTVIWVANRNQPLNDSSGVVTISEDGNLVVLNGQNQVIWSTNVSTTSSNTSAQLSDSGKLVLAETTRGTLWDSFQQPSNTLMPGMKTLTNAQTGRKVELTAWKSPSNPSVGSFSASVLRRINILEAFIWNETRPYWRSGPWNGAIFTGIPMSSFLYSFKAGDDEEGNTYFYYTIPSPLKIFIYVLNSRGQYEELSWNDKKEEMEISWTSHESDCDVYGICGPFSICNATNSPICSCLKGFEPMNKKEWNRQNWSSGCVRSTPLRCERVNQNVSAKEDGFSQLQMVKVPDFPEGSPVDTECRSQCLENCSCVAYSYDIGIGCMSWTGNLVDIQQFSEGGLELYVRVADSDLESDLEHDKGTHTAIIVGVTVTVVTVIIVTCAYVMWRTSNHPAKIWHSIRSARNRNINDFQRLKKVETLEHPSHKVIEELSQVKLQELLLFDFERLATATNNFHLSNKLGQGGFGPVYKGKLQDGKEVAVKRLSRASGQGQEEFMNEVVVISKLQHRNLVRLFGCCIEGDEKMLIYEYLPNKSLDVLIFDPSKSKLLDWRKRCGIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDEELNPKISDFGMARIFGGSEDQANTNRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLALEILSGRRNSSFYDDEHVLSLLGFAWIQWKEDNISSLIDPEVYDPSHHKDILRCIHIALLCVQELAIDRPSMAAVISMLNSEVAFLPPPSQPAFILRQNLLNSESSKGSHRFSSTNTASITTISGR 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3370g00004 833 ProSiteProfiles PAN/Apple domain profile. 328 409 IPR003609 -
Vium3370g00004 833 Pfam PAN-like domain 337 394 IPR003609 -
Vium3370g00004 833 ProSiteProfiles Bulb-type lectin domain profile. 19 138 IPR001480 -
Vium3370g00004 833 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 778 - -
Vium3370g00004 833 SMART blect_4 25 140 IPR001480 -
Vium3370g00004 833 SMART ntp_6 337 408 IPR003609 -
Vium3370g00004 833 ProSiteProfiles Protein kinase domain profile. 515 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3370g00004 833 CDD B_lectin 25 140 IPR001480 -
Vium3370g00004 833 Gene3D Transferase(Phosphotransferase) domain 1 591 791 - -
Vium3370g00004 833 MobiDBLite consensus disorder prediction 812 833 - -
Vium3370g00004 833 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Vium3370g00004 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Vium3370g00004 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 15 137 - -
Vium3370g00004 833 Pfam Protein tyrosine and serine/threonine kinase 516 784 IPR001245 GO:0004672|GO:0006468
Vium3370g00004 833 SMART serkin_6 515 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3370g00004 833 CDD PAN_AP_plant 324 409 - -
Vium3370g00004 833 Gene3D - 14 138 IPR036426 -
Vium3370g00004 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 794 - -
Vium3370g00004 833 Pfam S-locus glycoprotein domain 199 306 IPR000858 GO:0048544
Vium3370g00004 833 Pfam D-mannose binding lectin 65 166 IPR001480 -
Vium3370g00004 833 PIRSF SRK 1 833 IPR024171 GO:0004674
Vium3370g00004 833 SUPERFAMILY Protein kinase-like (PK-like) 500 813 IPR011009 -
Vium3370g00004 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 171 IPR036426 -
Vium3370g00004 833 CDD STKc_IRAK 521 787 - -
Vium3370g00004 833 FunFam receptor-like serine/threonine-protein kinase SD1-8 487 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3370g00004 Vium-Chr3370 63222 66682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3370g00004 473 833 Receptor kinase-like Gene Family AT4G11530 53.134 3.60e-123 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3370g00004 PK_Tyr_Ser-Thr 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3370g00004 - - var:108327403 1636.31