Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3370g00003 ATGGGTTTCAGCAACCATACAAACCTGTTCTTTGTTCTGTTCATACTGTGTTTTTATGTGTTGGACGTTTGTATTGCCATAGACAACATTACATCATCACAATCCATCAAGGACCCTGAAACTCTAAGGTCCAAAGATGGTAACTTCACTTTGGGGTTCTTCACCCCTCAAAACTCCACAAACCGCTATGTTGGAATTTGGTGGAAGTCTCAGTCTACAGTTATATGGGTTGCTAACAGAAACCAAGCACTGAATGATTCTTCTGGAATTGTTACAATATCTGAAGATGGCAATCTTGTTGTGCTGAATGGACAGAAACAAGTGATTTGGTCAACAAATGTGTCCAAAACATTATCCAATACAAGTTCAGAGTTTTCAGACTCTGGTAAGCTAGTTCTCATGGAAACCACAACAGGAAACATCTTATGGGATAGTTTTCAACAACCTTCAGATACACTCTTGCCCGGCATGAAACTTTCAACCAACACAAAAACTAAAAGGAAAGTTGAACTTACATCATGGAAAAGCCCTTCTAATCCGTCTATTGGGAGCTTCTCTTCTGGGGTTGTTCAACACCCTGATATTCTTGAAGTGTTTATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCATGGGATGGTGGGGTATTTACAGGGATACCGACCATGTCAACGTATCTTAATGGTTTCAAAGGTGGGGATGATGGCGAAGGAAATATAGATATCTATTACACAGTGTCAAGTGAATTAGATTTTGTAATCTATATGTTGAATTCTAAAGGCCAATATGAACAAAAACTGTGGGATGCTGAGAAGAACGAAATGGGAATTAGATGGACTAGTAAAGAGTCAGATTGTGATATTTATGGTATGTGTGGACCATTCACAAGCTGTAATGCACAGAGCAAACCAATATGTAGCTGTTTGAAAGGATTTGAGCCGAGGAACGAGAAGGAATGGAATGGAAAAAACTGGACTGGTGGATGTGTTAGGAGAACACCTTTGAAGTGTGAAAGGGTAAGAGATCAAAACACAAGTACGGATGCAAAGGAAGATGAATTTTTTAAACTGCAGATGGTTAAAGTTCCTGATTTTTCAGAAGGGTCTCCTGTTGAGACTGAGATATGCAGAAACCAATGCTTGGAGAATTGCTCTTGTGTTGCTTATTCTCATGATGAGAAGATTGGTTGCATGTCTTGGACTGGGAATCTACTAGATATACAACAATTCTCAGAGGGAGGACTTGATCTTTATCTTCGTGTAGCCTACTCTGAACTTGATAAAGGGTCAAACAAACAAATCATCATTACAACAGCAGTGATAGTAGCAACTGTGATCATGGTTACTGGTGCATATTTCATGTGGAGGACTTCCAATCGTCCAGCTAAATTTTGGCAGCTAATTAACTCAGTAAGGAAAGGGAAGAACGATGCTTTTGTAGAATTTAATAATGGTGGAACACCAGAACATGAAAGCCATAGTGTAATTGAAGAACTTTCACATGTTAAACTACATGAGCTGTTGCTATTTGATTTTAAAATGGCTGCAGCAGCCACAGACAACTTCCACCTTTCCAACAAACTTGGGCAAGGTGGTTTTGGTCCTGTGTACAAGGGGCAACTGGAAGATGGACAGGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTCTAGAAGAATTCATGAACGAAATAGTCGTGATTTCCAAGCTTCAACATCGCAATCTTGTAAAACTTTTTGGCTGCTGTGTAGAAGGTGATGAGAAGATGTTGATATATGAATACATGCCAAACAAAAGTTTGGATGTATTTATCTTTGATCCATCAAAGTGTAAACTCCTAGATTGGAGGAAGCGCAGTAGCATAATAGAAGGAATAGCTCGAGGACTACTTTATCTACACAGAGACTCCAGACTAAAAATAATACACAGAGATTTGAAGGCCAGTAATATATTGCTAGATGAAGAACTAAATCCAAAAATATCAGATTTTGGTATGGCTAGAATCTTTGGTGGAACTCAAGATCAAGTTAATACTAGTAGGGTTGTTGGAACCTATGGCTACATGTCTCCTGAATATGCAATGGAAGGACTATTTTCAGAAAAATCAGATGTGTTTAGCTTTGGTGTTCTGGTACTAGAGATTGTTAGTGGAAGAAGAAGCTCAGGTTTTTATGGCAATGTGCATGCTCTTAGCCTTTTAGAATTTGCTTGGACACAATGGAAGGAAGAAAATGCATTATCTCTAATACATCCAGAACTATATGATCCTATTCATCATAAAGATATCCTAAGGTGCATACACATAGCTCTTTTATGTGTACAAGAACTTTCTGTAGACAGACCCACTATGGCTACAGTAATTTCTATGCTCAGCAATGAGTTTGTGCTTCCTACGCCAAGTCAATCTGCATTCATTCGGCGACAAAAAATGTTGAATTTGACGTCATCGGAAGAAACTCAGAGATTTCGCTCCATCAATGTTGTTAGTGTTACAGAAATTCAAGGTAGATAG 2523 0.3888 MGFSNHTNLFFVLFILCFYVLDVCIAIDNITSSQSIKDPETLRSKDGNFTLGFFTPQNSTNRYVGIWWKSQSTVIWVANRNQALNDSSGIVTISEDGNLVVLNGQKQVIWSTNVSKTLSNTSSEFSDSGKLVLMETTTGNILWDSFQQPSDTLLPGMKLSTNTKTKRKVELTSWKSPSNPSIGSFSSGVVQHPDILEVFIWNETRPYWRSGPWDGGVFTGIPTMSTYLNGFKGGDDGEGNIDIYYTVSSELDFVIYMLNSKGQYEQKLWDAEKNEMGIRWTSKESDCDIYGMCGPFTSCNAQSKPICSCLKGFEPRNEKEWNGKNWTGGCVRRTPLKCERVRDQNTSTDAKEDEFFKLQMVKVPDFSEGSPVETEICRNQCLENCSCVAYSHDEKIGCMSWTGNLLDIQQFSEGGLDLYLRVAYSELDKGSNKQIIITTAVIVATVIMVTGAYFMWRTSNRPAKFWQLINSVRKGKNDAFVEFNNGGTPEHESHSVIEELSHVKLHELLLFDFKMAAAATDNFHLSNKLGQGGFGPVYKGQLEDGQEIAVKRLSRASGQGLEEFMNEIVVISKLQHRNLVKLFGCCVEGDEKMLIYEYMPNKSLDVFIFDPSKCKLLDWRKRSSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGTQDQVNTSRVVGTYGYMSPEYAMEGLFSEKSDVFSFGVLVLEIVSGRRSSGFYGNVHALSLLEFAWTQWKEENALSLIHPELYDPIHHKDILRCIHIALLCVQELSVDRPTMATVISMLSNEFVLPTPSQSAFIRRQKMLNLTSSEETQRFRSINVVSVTEIQGR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3370g00003 840 PIRSF SRK 3 840 IPR024171 GO:0004674
Vium3370g00003 840 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Vium3370g00003 840 Gene3D Transferase(Phosphotransferase) domain 1 599 801 - -
Vium3370g00003 840 SMART ntp_6 350 422 IPR003609 -
Vium3370g00003 840 CDD PAN_AP_plant 334 423 - -
Vium3370g00003 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Vium3370g00003 840 Gene3D - 23 147 IPR036426 -
Vium3370g00003 840 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 785 - -
Vium3370g00003 840 Gene3D Phosphorylase Kinase; domain 1 487 598 - -
Vium3370g00003 840 ProSiteProfiles Protein kinase domain profile. 523 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3370g00003 840 SMART serkin_6 523 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3370g00003 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Vium3370g00003 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Vium3370g00003 840 Pfam Protein tyrosine and serine/threonine kinase 524 794 IPR001245 GO:0004672|GO:0006468
Vium3370g00003 840 CDD B_lectin 33 149 IPR001480 -
Vium3370g00003 840 ProSiteProfiles PAN/Apple domain profile. 338 423 IPR003609 -
Vium3370g00003 840 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Vium3370g00003 840 Pfam D-mannose binding lectin 73 175 IPR001480 -
Vium3370g00003 840 Pfam PAN-like domain 351 408 IPR003609 -
Vium3370g00003 840 FunFam receptor-like serine/threonine-protein kinase SD1-8 495 598 - -
Vium3370g00003 840 CDD STKc_IRAK 529 794 - -
Vium3370g00003 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 802 - -
Vium3370g00003 840 SMART blect_4 33 149 IPR001480 -
Vium3370g00003 840 SUPERFAMILY Protein kinase-like (PK-like) 508 811 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3370g00003 Vium-Chr3370 47806 50892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3370g00003 507 808 Receptor kinase-like Gene Family AT4G23230 58.746 1.06e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3370g00003 PK_Tyr_Ser-Thr 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3370g00003 - - gmx:100779455 1362.82