Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3370g00002 ATGGATTACACCAACTGCACATACTTGTTCTTCGTTTTGATCATAGCATGTTTTCTTTTTTCAGATGTTGGTACTGCCACAGACACCATCACATCATCTCAGTTCATCAAGGACAATGAAACTATAACCTCCACTGGTGGCAACTACACCTTGGGGTTCTTCACCCCTCAAAATTCCACAAAACGTTATATGGGGATTTGGTGGCAACCCAAATTCACTGTCATATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCTGGAGTTGTTACCATATCTAAAGATGGCGATCTTGAGGTGTGGAATAGTCAGAATCATGTAATTTGGTCAACAAATGTGTACAGTGTTGGATCCAACACTACTTCTAAACTCTTGGATTCTGGGAACCTTGTCCTTCAGGAAAGCTCATCAAGAAGAACTATATGGGAGAGTTTCCAGCATCCTACAAATACTTTGTTACCCAATATGAAGATTTCAACAAACAAAGTAACTGGTGAGAAAGTAAAACTAACATCATGGAAAAGCCCTTCTGATCCATCCACCGGTAGCTTTTCTATAAGTGTTGAACGCCTTAGTATACCTGAAGTGTTCATCTGGAATGAAACTCGTCCATTATGGCGAACTGGTCCATGGAATAGTAAGATCTTTACAGGGCTGCCCTATATGAAAACGTATTATCTGGAAGGGGGACATGTTGGAGATGACGGGGAAGGAAATGTTGAATTCCATTACAAGGGAGTAGAAGAGATTGGCTTCCTAATCTATATTCTGAATTCAACGGGAAATTATGACGAGAGATTGTGGAATGGAGAGAGGAAAGAATGGGTTGTCACATGGAATAGCCATCAATTTGAGTGTGAAGTTTATGGTGTATGTGGACCTTTTGCAGTTTGTAATTCTGAAAGCTCACCAACATGCAGCTGTTTGAAAGGGTTTGAACCACGAAACAGAGAGGAATGGAATAGACAAAACTGGACTAGTGGATGTTTCAGGAGAACACCTCTGCACTGTGAAAGAGCCAGCAACCAAATCAAAAGTGCAGATCATACAGATGATGGATTTTTTGAAATGAAGATGGTCAAAGTTCCAGATTTTGCTGATAGCTCATCGCTCAGACTTCAACCAGACACGTGCAGAAGCCGATGTTTGGAAAATTGTTCATGCATTGCATACTCATATGATGCTGATATTGGTTGTATGTCTTGGACTGAGAATCTGATTGACATAACACAATTCTCAAACGGAGGACTTGATCTACATGTTCGAGTAGCCTACACAGAACTTGGTATACACTGTACAATGCTAGCTGTTATCTGCACAATAATCTTTATTAACTTTCTTCATCTGAGAACCTTTCTCCAGATTTGTAGTGGCCACGTAGAGATCATCAAAAGATTCCTTCAATTTAATGGAGATGGAGCACCTGCAGAATATATAAATGACAATGCATTTGGTGATCTGCCACAGGTCAAACTCCAGGAAACATTTAGTTTTGAAAACCTTGTAACCGCCACAAACAAATTTCACCCATCGAACAAACTAGGAGAGGGTGGTTTTGGTCCGGGGCAATTGCAAGATGGCAGGGAAATTGCAGTTAAAAGACTTTCAAGAGCATCTGGACAAGGTCAAGAAGAATTCATGAATGAAGTAGTGGTAATTTCCAAGCTTCAACACCGTAATCTTGTAAGACTTTTTGGCTGCTGTATTGAAGGTGACGAAAAGATGTTGATCTATGAATACTTGCCAAATAAAAGCTTGGACAAATATATCTTTGATTGTGCTTCATCTCAAAATGTTGCAATTCATACAATTCTACCATTTGATTCTTTAGATCCGTCAAAAGATAAGGTTCTTTATTGGAGAAAACGCTTTAGCATAATAGAAGGAGTTGCTCGAGGAATACTTTATCTTCATAGAGATTCCAGGCTAAAAATCATCCACAGGGACTTGAAGGCAAGTAATATCTTGCTAGATGTGGAACTAAATCCAAAAATATCTGACTTCGGTATGGCTAGAATCTTTGGTGGGAATGAGGATGAGGCAAATACTAAAAGAATTGTTGGAACATATGGCTATATGTCTCCTGAGTATGCAATGCAAGGATCGTTCTCTGAAAAATCAGATGTTTTTAGTTTTGGGGTTTTGCTACTTGAGATTGTTAGTGGAAGACGAAATTCAAGCTTTTATGATGAAGAAAACTGTCTTACCCTTTTAGGATTTGCCTGGATACAGTGGACAGCAGACAACATTCCCTCTCTAATAGATCCAGGAATATATGATCCTAGCCTTTATAAATATTTTTATAGGTGCATACACATAGGACTTCTATGTGTCCAAGAATTTCCAGCAGATAGGCCTACTATGTCTACTGTAATTTCTATGTTAAACAGTGAGATTGCGGATCGTCCTCCTCCAATGAAACCTGCATTCATCCTGAGAGAAAATATGTTAAGCTCACTTCCCTATGTAAGAGGAAATGACTTGAACTCCCTCAACACTGTCACTATTTCGGACATACAAGGCAGATAG 2532 0.3934 MDYTNCTYLFFVLIIACFLFSDVGTATDTITSSQFIKDNETITSTGGNYTLGFFTPQNSTKRYMGIWWQPKFTVIWVANRNQPLNDSSGVVTISKDGDLEVWNSQNHVIWSTNVYSVGSNTTSKLLDSGNLVLQESSSRRTIWESFQHPTNTLLPNMKISTNKVTGEKVKLTSWKSPSDPSTGSFSISVERLSIPEVFIWNETRPLWRTGPWNSKIFTGLPYMKTYYLEGGHVGDDGEGNVEFHYKGVEEIGFLIYILNSTGNYDERLWNGERKEWVVTWNSHQFECEVYGVCGPFAVCNSESSPTCSCLKGFEPRNREEWNRQNWTSGCFRRTPLHCERASNQIKSADHTDDGFFEMKMVKVPDFADSSSLRLQPDTCRSRCLENCSCIAYSYDADIGCMSWTENLIDITQFSNGGLDLHVRVAYTELGIHCTMLAVICTIIFINFLHLRTFLQICSGHVEIIKRFLQFNGDGAPAEYINDNAFGDLPQVKLQETFSFENLVTATNKFHPSNKLGEGGFGPGQLQDGREIAVKRLSRASGQGQEEFMNEVVVISKLQHRNLVRLFGCCIEGDEKMLIYEYLPNKSLDKYIFDCASSQNVAIHTILPFDSLDPSKDKVLYWRKRFSIIEGVARGILYLHRDSRLKIIHRDLKASNILLDVELNPKISDFGMARIFGGNEDEANTKRIVGTYGYMSPEYAMQGSFSEKSDVFSFGVLLLEIVSGRRNSSFYDEENCLTLLGFAWIQWTADNIPSLIDPGIYDPSLYKYFYRCIHIGLLCVQEFPADRPTMSTVISMLNSEIADRPPPMKPAFILRENMLSSLPYVRGNDLNSLNTVTISDIQGR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3370g00002 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 787 - -
Vium3370g00002 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Vium3370g00002 843 SMART ntp_6 350 424 IPR003609 -
Vium3370g00002 843 Gene3D - 21 147 IPR036426 -
Vium3370g00002 843 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Vium3370g00002 843 SMART blect_4 33 149 IPR001480 -
Vium3370g00002 843 Gene3D Transferase(Phosphotransferase) domain 1 598 804 - -
Vium3370g00002 843 SMART serkin_6 509 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3370g00002 843 FunFam Uncharacterized protein 517 581 - -
Vium3370g00002 843 CDD B_lectin 33 149 IPR001480 -
Vium3370g00002 843 SUPERFAMILY Protein kinase-like (PK-like) 496 822 IPR011009 -
Vium3370g00002 843 Pfam D-mannose binding lectin 73 175 IPR001480 -
Vium3370g00002 843 Pfam PAN-like domain 351 410 IPR003609 -
Vium3370g00002 843 CDD PAN_AP_plant 334 425 - -
Vium3370g00002 843 ProSiteProfiles PAN/Apple domain profile. 338 425 IPR003609 -
Vium3370g00002 843 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Vium3370g00002 843 ProSiteProfiles Protein kinase domain profile. 509 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3370g00002 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Vium3370g00002 843 Pfam Protein tyrosine and serine/threonine kinase 513 795 IPR001245 GO:0004672|GO:0006468
Vium3370g00002 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Vium3370g00002 843 PIRSF SRK 2 843 IPR024171 GO:0004674
Vium3370g00002 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 804 - -
Vium3370g00002 843 Gene3D Phosphorylase Kinase; domain 1 488 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3370g00002 Vium-Chr3370 29039 32329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3370g00002 497 813 Receptor kinase-like Gene Family AT4G11530 55.452 3.65e-112 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3370g00002 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3370g00002 - - var:108327403 1038.48