Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3370g00001 ATGCTGTGTTTTTATGTGTTGGACGTTGTTGCCACAGACACCATCACACCATCAGAATCCATCAAGGACCCAGAAACTATAATCTCCAAAGATGGTAATTTCACTTTGGGGTTCTTCATTCCTCCAAACTCCACAAACACTTACGTTGGAATTTGGTGGAAGTCTCAATCTACAGTCGTATGGGTTGCTAACAGAAATCAACCACTGAATGATTCGTCAGGAGTTGTTACCTTTTCTGAAGACGGCAATCTTGTGGTGCTGAATGGAGATCAAGTTCTTTGGTCGTCAACAATTGTGTCAAACACATCCTCCAGTATATATGCCCGGCTTTCAGACGAGGGGAAGCTTGAAATCACAGAAAACACAGCGGGGAACAGCTTATGGGATAGTTTTCAACAACCTTCAGATACATTACTGCCCCAAATGAAAATTTCAAGCAATAGAACAGGTAGGGGAATAAGACTTACATCATGGACGAACCCTTCTAATCCCTCTGCTGGGAACTTCTCTTTGGGTGTTGTTGAACGCGGAAAAATCGTTGAAGTGTTCATTTGGAATGAAACTCAACCATACTGGCGCAGTGGTCCTTGGAGCGTTGGGGTCTTTACAGGGGTAGAGCACATGGCTAGTGCATATCTAAATAGCTTTTCTGTTGTAGACGGTGAAGTCTCTTATAACCCAAGTGCATCTGAATTTGGAATCTACGTTCTGAATTCTCAAGGTCAGTTTGAAGAAAAATATTGGGATGATGAGAAGAAAGAACTACAACTTACTTGGACGAGTAAACAATCGGATTGTGATGTTTATGGTGTATGCGGGTCGTTTGCAATTTGTGATGCACATAGCCAAGGAACAAATGGCTCAGCAATATGCAGCTGTTTGGAAGGGTTTGAGCCAAACAACAAAGAGGAATGGGATGCACAAAACTGGACTAGTGGATGTTTCAGGAGCACACCCTTGCAGTGTGAAAGAGTTAAAGATGAAAACACAACTACAGATACAAATGTAGATCAATTTTTGGAACTGCAAATGGTGAAAGTTCCAGATTTTTCTGAATGGTCTAGTGCTGAGCCAGAGACATGCAGAAGCCAATGCTTGGAAAATTGCTCTTGTGTTGCGTATTCTCACGATGATGGGATTGGTTGTATGTTTTGGAATGACAATCTACTAGACATCCAACAACTCTCAAGTCGAGGACTTAATCTATATGTTCGTGTAGACTCTTCTGAACTTGAACATGATGAAGGGAAAAAGACAACAATTATCATTACAATAACAGTGATAATAGGTATTGTGATCATTGTCACTTCTGCATGTGTAATATGGAGGAGGACATCCTGTCGCCCAGCTAAAATATGGTACTCAATCAAATCAGCAATGAATAGGGGCAAGAAAGGTTTTTTATGTTTCAAGAACGATGAATCATTAGAACAAACAGGCAACAAAGTATTTGAAGAACTGTCACGAGTTAAACTACAGGAGCTGCTCCTGTTTGATTTCGAAAAGCTTGCGACTGCCACAAACAACTTCCACCAGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTCTACAAGGGGAAACTGCCAAATGGACAAGAAATAGCAGTTAAAAGACTTTCTACAGCCTCTGGACAAGGTCAAGAAGAATTCATGAATGAAGTGGTGGTCATTTCCAAGCTTCAACACCGTAATCTTGTAAGACTTTTTGGCTGTTGCATTGAAGGTGACGAAAAGATGTTGATCTATGAATACTTGCCAAATAAAAGCTTGGATGTATTAATCTTTGATCCATCAAAAAGTAAACTCCTAGATTGGAGGAAGCGCTGTGGCATAATAGAAGGAATAGCTCGAGGGTTGCTTTATCTTCATAGAGACTCTAGACTAAAAATTATACACAGAGATTTGAAGACAAGTAATATCTTGTTAGATGAAGAACTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGAACAGAAGATCACGCTAATACTAATAGGATTGTTGGGACATATGGCTACATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCGGATGTCTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGAAGAAGAAACACAAGCTTTTATGATGATGAGCATTCTCTTACCCTTCTAGGATTTACCTGGGCACAGTGGAAAGAAGGCAATATATTATCTTTAATAGATTCAGAAATATATGATCCTAATGATCATGAAGATATGTTAAGGCTCATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTCAGACAGACCCACAATGGCTACAGTAGTTTCTATGCTTAATAGTGATGTTGTCTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCGGGTGCAAAACGTGGTTAATTCAGAGTTGTCTGAAAAAAGTCAAAGAGTTTGTTCCGTGAATATTATTAGTATTACAGAAATCCGTGGTAGGTAG 2487 0.3993 MLCFYVLDVVATDTITPSESIKDPETIISKDGNFTLGFFIPPNSTNTYVGIWWKSQSTVVWVANRNQPLNDSSGVVTFSEDGNLVVLNGDQVLWSSTIVSNTSSSIYARLSDEGKLEITENTAGNSLWDSFQQPSDTLLPQMKISSNRTGRGIRLTSWTNPSNPSAGNFSLGVVERGKIVEVFIWNETQPYWRSGPWSVGVFTGVEHMASAYLNSFSVVDGEVSYNPSASEFGIYVLNSQGQFEEKYWDDEKKELQLTWTSKQSDCDVYGVCGSFAICDAHSQGTNGSAICSCLEGFEPNNKEEWDAQNWTSGCFRSTPLQCERVKDENTTTDTNVDQFLELQMVKVPDFSEWSSAEPETCRSQCLENCSCVAYSHDDGIGCMFWNDNLLDIQQLSSRGLNLYVRVDSSELEHDEGKKTTIIITITVIIGIVIIVTSACVIWRRTSCRPAKIWYSIKSAMNRGKKGFLCFKNDESLEQTGNKVFEELSRVKLQELLLFDFEKLATATNNFHQSNKLGQGGFGPVYKGKLPNGQEIAVKRLSTASGQGQEEFMNEVVVISKLQHRNLVRLFGCCIEGDEKMLIYEYLPNKSLDVLIFDPSKSKLLDWRKRCGIIEGIARGLLYLHRDSRLKIIHRDLKTSNILLDEELNPKISDFGMARIFGGTEDHANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNTSFYDDEHSLTLLGFTWAQWKEGNILSLIDSEIYDPNDHEDMLRLIHIGLLCVQELASDRPTMATVVSMLNSDVVFLPPPSQPAFIRVQNVVNSELSEKSQRVCSVNIISITEIRGR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3370g00001 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 49 164 IPR036426 -
Vium3370g00001 828 ProSiteProfiles Bulb-type lectin domain profile. 12 131 IPR001480 -
Vium3370g00001 828 PIRSF SRK 1 828 IPR024171 GO:0004674
Vium3370g00001 828 SMART serkin_6 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3370g00001 828 ProSiteProfiles Protein kinase domain profile. 510 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3370g00001 828 SUPERFAMILY Protein kinase-like (PK-like) 495 802 IPR011009 -
Vium3370g00001 828 SMART blect_4 18 134 IPR001480 -
Vium3370g00001 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 8 131 - -
Vium3370g00001 828 Gene3D Phosphorylase Kinase; domain 1 472 585 - -
Vium3370g00001 828 Pfam S-locus glycoprotein domain 192 300 IPR000858 GO:0048544
Vium3370g00001 828 CDD PAN_AP_plant 318 406 - -
Vium3370g00001 828 Pfam PAN-like domain 335 392 IPR003609 -
Vium3370g00001 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Vium3370g00001 828 SMART ntp_6 334 406 IPR003609 -
Vium3370g00001 828 Gene3D Transferase(Phosphotransferase) domain 1 586 786 - -
Vium3370g00001 828 CDD STKc_IRAK 516 782 - -
Vium3370g00001 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vium3370g00001 828 Pfam D-mannose binding lectin 58 158 IPR001480 -
Vium3370g00001 828 ProSiteProfiles PAN/Apple domain profile. 322 407 IPR003609 -
Vium3370g00001 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 772 - -
Vium3370g00001 828 CDD B_lectin 18 134 IPR001480 -
Vium3370g00001 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 585 - -
Vium3370g00001 828 Pfam Protein tyrosine and serine/threonine kinase 511 781 IPR001245 GO:0004672|GO:0006468
Vium3370g00001 828 Gene3D - 7 132 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3370g00001 Vium-Chr3370 19906 23166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3370g00001 496 828 Receptor kinase-like Gene Family AT3G45860 55.588 1.47e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3370g00001 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3370g00001 - - gsj:114424251 1174.07