Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3369g00005 ATGGCTACTCCTGTTGATCCTCCTAATGGAATCAAGAATGAAGGGAAGCATTATTTCTCCATGTGGCAAGCGCTGTTCGAGATTGATTCAAAATACGTGCCAATCAAGCCCATTGGTCGCGGTGCATACGGGATCGTCTGCTCTTCTGTGAATAAAGAGACCAATGAGAAGGTTGCCATAAAAAAAATACAAAATGCCTTTGAGAACCGGGTTGATGCTTTGAGAACTTTGCGCGAACTCAAGCTTCTTCGCCACCTTCACCATGAGAATGTAATTGCTTTGAAGGACATCATGATGCCTGTTCAGAGGAATAGTTTCAAGGATGTCTATCTGGTTTATGAACTCATGGACACGGATTTGCACCAGATTATTAAGTCTTCTCAAGCACTGTCTAATGATCACTGCCAGTATTTCCTCTTTCAGTTGCTACGAGGCTTGAAATATCTTCATTCCGCTAACATCCTTCATCGTGACTTGAAACCTGGGAATCTTCTGATCAACGCAAATTGTGACCTAAAAATATGTGATTTCGGGTTAGCAAGAATTAACTGCAGCAAGAACCAGTTCATGACCGAGTATGTTGTGACAAGGTGGTATAGGGCACCAGAGCTCCTACTCTGCTGCGACAACTACGGAACATCAATTGATGTTTGGTCGGTTGGATGCATCTTTGCTGAGCTTCTTGGTCGAAAACCGATTTTCCCTGGTTCAGAGTGTCTCAACCAGCTGAAATTGATCATCAATATCCTTGGTAGTCAAAGGGAGGAGGACATCGAGTTCATCGATAATCCAAAGGCAAAGAAGTATATCAAATCACTTCCTTCTTCTCCTGGAACCCCCTTTTCGCGACTTTATCCTAATGCACATCCTTTGGCAATTGATCTTCTGGCAAAGATGCTTGTTTTCGATCCAACAAAGAGGATCAGTGTCACTGAAGCGCTTCAACACCCTTACATGGCCCCTCTTTACGATCCTAACTGTGACCCCCCAGCTGTGATTCCAATTGATCTTGACATTGATGAGGATCTGGGGGAAGAGATGATAAGGGAGATGATGTGGAAAGAAATGCTTCATTACCATCCTGAAGCTGCTGTAGAGAGTGCAGGGCTGTGCTGA 1116 0.44 MATPVDPPNGIKNEGKHYFSMWQALFEIDSKYVPIKPIGRGAYGIVCSSVNKETNEKVAIKKIQNAFENRVDALRTLRELKLLRHLHHENVIALKDIMMPVQRNSFKDVYLVYELMDTDLHQIIKSSQALSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARINCSKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIINILGSQREEDIEFIDNPKAKKYIKSLPSSPGTPFSRLYPNAHPLAIDLLAKMLVFDPTKRISVTEALQHPYMAPLYDPNCDPPAVIPIDLDIDEDLGEEMIREMMWKEMLHYHPEAAVESAGLC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3369g00005 371 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3369g00005 371 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Vium3369g00005 371 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3369g00005 371 FunFam Mitogen-activated protein kinase 18 126 - -
Vium3369g00005 371 SUPERFAMILY Protein kinase-like (PK-like) 25 326 IPR011009 -
Vium3369g00005 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 336 - -
Vium3369g00005 371 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3369g00005 371 CDD STKc_TEY_MAPK 26 361 - -
Vium3369g00005 371 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium3369g00005 371 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Vium3369g00005 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vium3369g00005 371 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Vium3369g00005 371 FunFam Mitogen-activated protein kinase 116 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3369g00005 Vium-Chr3369 28591 31299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3369g00005 1 370 MAP Kinase Gene Family AT1G10210 85.135 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium3369g00005 Pkinase 1.9e-71 CL0016