Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3369g00002 ATGGAAGCCCCTGATTGTATGTATCGTGGTGAAGCATTGAGCATTCCTCCAAGCGCTCCTACCCCAAAACATTCTCTCTATCTGTCCAATCTCGACGACCAAAACTTCCTAAGGTTTTCCATCAAATACTTGTACCTCTTCAACAAGTCCTTGAACTTGGATGTGTTGAAGTCTTCTCTGGCCAGAGTTCTGGTGGATTATTACCCCTTGGCCGGTCGCTTGAGGACCGTCGATCATCAGAAGCTCGAGGTCGATTGCAATGGACAGGGTGCTCTCTTTGCCGAGGCTTTCACTCACACCACTCTTCATCAACTTCTCGAATCTTCCAAGACTCCAAACAAATCTTGGAAGAAGTTCTTGTATAAGGTCGAAGCTCACACTTTCGTCGATGTTCCTCCTCTCGTAGTCCAGGTAACGAGGCTGGGTTGCGGGGGAATGATCCTGTGCACGGCGATCAACCACTGCGTATGCGACGGCATAGGCACGTCTCAGTTTCTACACGCCTGGGCACAGCTCACGAAAAAGCCAGAAGCGGAATTGACGATCATGCCCTTCCACTGGCGCCACGTGCTGAAACCCAGACACCCTGCGCAGGTAAAGTTCCGTCACGCGGGCTACACCGCACCAAACCCAACCCCTCAAGTGGACCTTCTAAAGTTCATACAGTCACAGCCCTTGGTAGCCACATCCTTCACCCTCACCCCCTCCCACGTCCTTCGCCTCAAGAAAGAGTGCGTCCCCTCCCTCAAGTGCACCTCCTTCGAAACCGTTGCGGCCCACACCTGGCGCTCTTGGATTCGCTCGGTGGGCCAATCCCTACCGTCCAAACTCACTGTGAAGCTCCTTTTCTCGGTCAACGTTAGAAGAACAGTTGACCTTCCGCAGGGGTATTACGGGAACGGATTCTTGCTAGCGTGCGCTGAGAGCAGCGTGGAGGACTTAGTGGACGGTAACCTGCGCCACGGAGTGAAACTTGTGCAGGAAGCTAAGGCGAGGTTGAAAGAGGAGGAGTACGTAAGGTCAATGGTTGACCTGTTAGAGGACAAAACTGTAAAAACGGATCTTTCGACGAGTTTAGTTATTTCGCAGTGGTCTAGACTGGGGTTGGAAGAGGTGGATTTTGGGGAAGGGAAACCTTTGCATATGGGTCCTTTGACCAGTGATATTTACTGCTTGTTCTTACCCGTCGCCGGTGACGCTAATGCCGTCAGAGTGCTGCTGTCTGTCCCCGCGACCATGGTGGAACGTTTTCAGTATCACATGATGAGACGAAGTCGGGAAGAAAATGAAGAAAACGGATTCTTCTGA 1308 0.5176 MEAPDCMYRGEALSIPPSAPTPKHSLYLSNLDDQNFLRFSIKYLYLFNKSLNLDVLKSSLARVLVDYYPLAGRLRTVDHQKLEVDCNGQGALFAEAFTHTTLHQLLESSKTPNKSWKKFLYKVEAHTFVDVPPLVVQVTRLGCGGMILCTAINHCVCDGIGTSQFLHAWAQLTKKPEAELTIMPFHWRHVLKPRHPAQVKFRHAGYTAPNPTPQVDLLKFIQSQPLVATSFTLTPSHVLRLKKECVPSLKCTSFETVAAHTWRSWIRSVGQSLPSKLTVKLLFSVNVRRTVDLPQGYYGNGFLLACAESSVEDLVDGNLRHGVKLVQEAKARLKEEEYVRSMVDLLEDKTVKTDLSTSLVISQWSRLGLEEVDFGEGKPLHMGPLTSDIYCLFLPVAGDANAVRVLLSVPATMVERFQYHMMRRSREENEENGFF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3369g00002 435 Gene3D - 11 208 IPR023213 -
Vium3369g00002 435 Pfam Transferase family 15 421 - -
Vium3369g00002 435 Gene3D - 219 421 IPR023213 -
Vium3369g00002 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 15 418 - -
Vium3369g00002 435 SUPERFAMILY CoA-dependent acyltransferases 39 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3369g00002 Vium-Chr3369 11133 13961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3369g00002 17 384 Monolignol Biosynthesis Gene Families AT5G48930 30.808 1.20e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3369g00002 - - var:108341288 865.914