Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3368g00001 ATGGATATCAAAGCCAAGACAGTTTATAAACGATGGCGGTCCACCCCGGAACAAGTTAACATCTTGTTGAACATCTTCAACCATGGGATCATTAATCCTAGTCGAGATCAAATTCGCGAGATTACAGAACGACTCAAGGAGTACGGAGAAGTTGGAGAATATAGCGTCTATTGTTGGTTTCAAAACCATGGAAATCGGGTGAAGCATCGACGCTTGCCGCAAGACGTCCCTGGTACATCTGAACCTTCATATTCCCTCCTTCCGTCGTTTATGTATGCCATGGCATCTCAAGCATTCTCCGTCAACTTCTTCCTCGTTGCTCTCATCGCAGCACTTTTCTTCGCCGTGGCCACCGCTGAAGAATTATCTCCGGCCCCGGCACCGGGACCTGATGCCGGAGCAGGCGCTTCCGTGTCAAGCTCGATGGCCGTGATTGGAGCTTCGATTGTGGTTTCAATGTTTGCGATATTGAAGCAGTGA 480 0.4896 MDIKAKTVYKRWRSTPEQVNILLNIFNHGIINPSRDQIREITERLKEYGEVGEYSVYCWFQNHGNRVKHRRLPQDVPGTSEPSYSLLPSFMYAMASQAFSVNFFLVALIAALFFAVATAEELSPAPAPGPDAGAGASVSSSMAVIGASIVVSMFAILKQ 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3368g00001 159 CDD homeodomain 10 71 IPR001356 GO:0003677
Vium3368g00001 159 Pfam Homeodomain 10 70 IPR001356 GO:0003677
Vium3368g00001 159 Gene3D - 9 75 - -
Vium3368g00001 159 SUPERFAMILY Homeodomain-like 6 70 IPR009057 -
Vium3368g00001 159 ProSiteProfiles 'Homeobox' domain profile. 5 70 IPR001356 GO:0003677
Vium3368g00001 159 PANTHER WUSCHEL-RELATED HOMEOBOX 9 10 71 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3368g00001 Vium-Chr3368 13345 16705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3368g00001 11 89 Wox Gene Family AT5G45980 45.000 5.06e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium3368g00001 Homeodomain 2.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3368g00001 - - vum:124834216 253.062