Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium335g00006 ATGGCACTAAGTGGTAGGCATTGCTGTATCATCTTCATCGTTTTTGAATTAGCATCCTTCTTTCCTCTCTCTTATGCCGCTTCTGACTTAGAATTGCTCCTCAAAATGAAAGAAAGCTTAGAAAACTACGGTTCCTCCTTGGACTCCTGGAACTCTACCACTCCTCCTTGCACCGATGGCCATGCCAACTGGCGTGGCATTCTTTGCTACGAAGGAAAAGTGTGGGGCGTGAAGCTTGAGAACATGGGGCTCCAAGGCCTCATTGACATCGATTCTTTAAAGGCCTTGCCTTACCTAAGAACCTTGAGTTTCATGAACAATAGTTTGGAGGGTCCATGGCCAGAAATTCACAACTTGGTTGGTCTCAAGTCTATTTACCTTTCCAATAACAAGTTTTCTGGGGAGATTCCTTATAGAGCCTTCGAGGGGTTGAAGTGGTTGAAGAAAGTTTATCTGTCCAACAACCAGTTCTCCGGTTACGTTCCAACTTCGCTCACGGTGTTGCCGAGACTCATAGAGCTCAGGTTGGACGGGAATGAGTTCACTGGTGCCATTCCCCGTTTTCATCCCCTCAACAGATTGAGATTGTTTAATGTTGCTAATAATCAGTTGCAGGGTCAGATTCCTTCCACCATTAATAGAATGCCGGCTTCTTCCTTTGCTGGTAATGAAAGGTTATGTGGAGCCCCATTTGAGTCATGCACCTCGAAGCCCTCCACTGCTAGCGTCGTTGGAGCAGTGGTGGTTGTTTGCCTGGCGGTGCTTGTGATTGGAATAGTAGTGCTCATGATTCACAAAAAACAGAACGGAGCGTGTGCAGCGAAATTGGGGAATCCACCCAGCAGCATCGGCAAAGGGCGTTTGAGGGACGTGGGTGATGAGAGCCGCAGGTCCGCAGGGTCAATGAGCTCCACAGACACCAGAAAAGCTGAACACTTGAGACTCTCTTTTCTGAGAGATGACAGAGAAATGTTTGACCTGCAAGAGTTGCTGAGAGCTTCTGCGGAGATTTTGGGAAGTGGCTGCTTCAGCTCTTCATACAAGGCTGCTTTGGTGAATGGGCCAACAATCGTGGTGAAGAGGTTCAAGCAGATGAACAATGTGGGGAAGGAAGAGTTCCAAGATCACATGAGAAGGCTAGGGAGGTTGAGTCATCCTAATTTGCTTCCTCCAGTGGCTTATTATTACAGAAGGGAAGAGAAGCTCGTGGTCACAGACTATGTTCGCAATGGAAGTCTCGCTGTTCGCCTTCATGGGCACCAATCCCTGGGAGAACCAAGCCTTGAGTGGCCAATCCGGTTGAAGATTGTGAAAGGCATAGCAAAAGGTCTTGAATATCTATACAGGGACATGCCAAGCCTAATTGCCCCACATGGAAATCTGAAGTCTTCTAATGTTCTGTTGAGCGAATCTTTTGAGCCTCTTCTGACAGACTATGGCCTAGTTCCAATGATAAACCAGGAATTGGCTCAGGACATCATGGTGATATACAAATCTCCTGAGTATTTGCAACAAGGAAGGATCACAAAGAAGACTGATGTGTGGTGTCTTGGAATACTGATTCTGGAGATCTTAACTGGGAAGTTCCCAGCAAACTTTTTGCAAAAGGGTAAAGGGAGTGAGGTGAGTTTGGCAAGTTGGGTGGATTCAGTGGTGCCAGAAGAGTGGACCAATGCTGTGTTCGATCAAGAAATGGGGACAACTAAGAACAGTGAAGGAGAGATGGAGAAGCTTTTGAAGATTGCTTTGAATTGTTGTGAGGCGGATGTGGATAAGAGGTGGGTTAAGGAAGCTGTAGAGAAGATTCTTCGAGGTGAAGGAAAGGACGGTGATCAAGAAATTTTTTTAACTTCTTATGCTAGTGATGCAGAATTGATTTCCTCAACTTGA 1890 0.463 MALSGRHCCIIFIVFELASFFPLSYAASDLELLLKMKESLENYGSSLDSWNSTTPPCTDGHANWRGILCYEGKVWGVKLENMGLQGLIDIDSLKALPYLRTLSFMNNSLEGPWPEIHNLVGLKSIYLSNNKFSGEIPYRAFEGLKWLKKVYLSNNQFSGYVPTSLTVLPRLIELRLDGNEFTGAIPRFHPLNRLRLFNVANNQLQGQIPSTINRMPASSFAGNERLCGAPFESCTSKPSTASVVGAVVVVCLAVLVIGIVVLMIHKKQNGACAAKLGNPPSSIGKGRLRDVGDESRRSAGSMSSTDTRKAEHLRLSFLRDDREMFDLQELLRASAEILGSGCFSSSYKAALVNGPTIVVKRFKQMNNVGKEEFQDHMRRLGRLSHPNLLPPVAYYYRREEKLVVTDYVRNGSLAVRLHGHQSLGEPSLEWPIRLKIVKGIAKGLEYLYRDMPSLIAPHGNLKSSNVLLSESFEPLLTDYGLVPMINQELAQDIMVIYKSPEYLQQGRITKKTDVWCLGILILEILTGKFPANFLQKGKGSEVSLASWVDSVVPEEWTNAVFDQEMGTTKNSEGEMEKLLKIALNCCEADVDKRWDXKEAVEKILRGEGKDGDQEIFLTSYASDAELISST 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium335g00006 630 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 605 IPR046959 -
Vium335g00006 630 Pfam Protein tyrosine and serine/threonine kinase 336 602 IPR001245 GO:0004672|GO:0006468
Vium335g00006 630 FunFam Pollen receptor-like kinase 1 408 616 - -
Vium335g00006 630 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Vium335g00006 630 ProSiteProfiles Protein kinase domain profile. 332 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium335g00006 630 Gene3D Phosphorylase Kinase; domain 1 297 407 - -
Vium335g00006 630 SUPERFAMILY L domain-like 54 216 - -
Vium335g00006 630 MobiDBLite consensus disorder prediction 283 305 - -
Vium335g00006 630 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vium335g00006 630 Gene3D Transferase(Phosphotransferase) domain 1 408 612 - -
Vium335g00006 630 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Vium335g00006 630 SUPERFAMILY Protein kinase-like (PK-like) 336 602 IPR011009 -
Vium335g00006 630 FunFam pollen receptor-like kinase 1 301 407 - -
Vium335g00006 630 Gene3D Ribonuclease Inhibitor 190 234 IPR032675 -
Vium335g00006 630 FunFam Nuclear pore complex protein NUP107 26 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium335g00006 Vium-Chr335 31843 34729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium335g00006 8 629 Receptor kinase-like Gene Family AT5G35390 51.994 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium335g00006 PK_Tyr_Ser-Thr 3.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium335g00006 - - gmx:100804368 952.584